Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DBK22_RS15210 Genome accession   NZ_CP028961
Coordinates   3066575..3067687 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102752     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3061575..3072687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS15185 (DBK22_03056) rnpA 3062288..3062638 (-) 351 WP_004392944.1 ribonuclease P protein component -
  DBK22_RS15190 rpmH 3062792..3062926 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  DBK22_RS15195 (DBK22_03057) dnaA 3063548..3064888 (+) 1341 WP_007409908.1 chromosomal replication initiator protein DnaA -
  DBK22_RS15200 (DBK22_03058) dnaN 3065073..3066209 (+) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  DBK22_RS15205 (DBK22_03059) rlbA 3066344..3066559 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  DBK22_RS15210 (DBK22_03060) recF 3066575..3067687 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  DBK22_RS15215 (DBK22_03061) remB 3067705..3067950 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  DBK22_RS15220 (DBK22_03062) gyrB 3068007..3069923 (+) 1917 WP_011996153.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DBK22_RS15225 (DBK22_03063) gyrA 3070139..3072607 (+) 2469 WP_160242481.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=289018 DBK22_RS15210 WP_007409910.1 3066575..3067687(+) (recF) [Bacillus velezensis strain SRCM102752]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=289018 DBK22_RS15210 WP_007409910.1 3066575..3067687(+) (recF) [Bacillus velezensis strain SRCM102752]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAT
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTACCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment