Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DBK22_RS08630 Genome accession   NZ_CP028961
Coordinates   1769958..1770710 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain SRCM102752     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1764958..1775710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS08605 (DBK22_01732) mreC 1765394..1766257 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  DBK22_RS08610 (DBK22_01733) mreB 1766288..1767301 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  DBK22_RS08615 (DBK22_01734) radC 1767393..1768088 (-) 696 WP_007408165.1 RadC family protein -
  DBK22_RS08620 (DBK22_01735) - 1768120..1768689 (-) 570 WP_069006954.1 Maf family protein -
  DBK22_RS08625 (DBK22_01736) - 1768830..1769831 (-) 1002 WP_069006955.1 SPOR domain-containing protein -
  DBK22_RS08630 (DBK22_01737) comC 1769958..1770710 (-) 753 WP_012118107.1 prepilin peptidase Machinery gene
  DBK22_RS08635 (DBK22_01738) - 1770850..1772142 (-) 1293 WP_069006956.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DBK22_RS08640 (DBK22_01739) - 1772201..1774843 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  DBK22_RS08645 (DBK22_01740) - 1775296..1775487 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=288995 DBK22_RS08630 WP_012118107.1 1769958..1770710(-) (comC) [Bacillus velezensis strain SRCM102752]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=288995 DBK22_RS08630 WP_012118107.1 1769958..1770710(-) (comC) [Bacillus velezensis strain SRCM102752]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCGGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment