Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DBO93_RS01975 Genome accession   NZ_CP028924
Coordinates   450705..452255 (-) Length   516 a.a.
NCBI ID   WP_239059073.1    Uniprot ID   -
Organism   Colwellia sp. Arc7-D     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445705..457255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBO93_RS01955 (DBO93_01955) - 447432..447818 (-) 387 WP_108454828.1 gamma-butyrobetaine hydroxylase-like domain-containing protein -
  DBO93_RS01960 (DBO93_01960) hslU 447845..449173 (-) 1329 WP_108454829.1 HslU--HslV peptidase ATPase subunit -
  DBO93_RS01965 (DBO93_01965) hslV 449196..449714 (-) 519 WP_085306175.1 ATP-dependent protease subunit HslV -
  DBO93_RS01970 (DBO93_01970) - 450044..450499 (-) 456 WP_239059072.1 SPOR domain-containing protein -
  DBO93_RS01975 (DBO93_01975) priA 450705..452255 (-) 1551 WP_239059073.1 primosomal protein N' Machinery gene
  DBO93_RS18855 - 452261..452932 (-) 672 WP_239059074.1 hypothetical protein -
  DBO93_RS01980 (DBO93_01980) rpmE 453168..453380 (+) 213 WP_077286181.1 50S ribosomal protein L31 -
  DBO93_RS01985 (DBO93_01985) - 453619..454167 (+) 549 WP_108454831.1 RNA polymerase sigma factor -
  DBO93_RS01990 (DBO93_01990) - 454168..454692 (+) 525 WP_239059075.1 hypothetical protein -
  DBO93_RS01995 (DBO93_01995) - 454723..455664 (+) 942 WP_108454832.1 DUF4097 family beta strand repeat-containing protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 57883.40 Da        Isoelectric Point: 9.1723

>NTDB_id=288581 DBO93_RS01975 WP_239059073.1 450705..452255(-) (priA) [Colwellia sp. Arc7-D]
MQSQFSCHLVDGITGSGKTEVYLQAIEQILAKSQQVLVLVPEIGLTPQTLSRFEQRFNVPISLHHSGLNDKERLQTWLEA
QRGTAAIVIGTRSAIFTPLHDLGLIIVDEEHDASFKQQDSFRYHARDIAILRARQLDIPIILGTATPSFESLQNALTGKY
HYHQLRKRAGNASTAKITLIDVAQQQMEHGLSGTLKQAIKNTLARGEQALIFLNRRGYAPAINCQECHWVADCQRCNKPY
TLHQGQGLLICHHCGSQKRIPPQCPSCGSVRIKPIGQGTEQLEEKISSLFPDYSTVRIDRDSTRKKGALAKLLTEVSNKE
HQLLIGTQMLAKGHHFPDVTLVAVLDVDGALFSYDFRAAEHMAQLLVQVSGRAGRASKPGRVMVQSNFPEHPLLQDLVNN
GYQHFAKQALIERQQALLPPFSFQALFRADANYPSYPEKFLRAMTEMPFEGCQFAGPVPAAMEKKAGKFRFHLILQAKSR
KQLHQAVFKLIHQSANNEWQSKVRWSIDIDPVDLSW

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=288581 DBO93_RS01975 WP_239059073.1 450705..452255(-) (priA) [Colwellia sp. Arc7-D]
ATGCAATCGCAGTTTTCTTGTCACTTAGTCGACGGTATAACCGGCAGTGGTAAAACAGAAGTATATTTACAGGCTATTGA
ACAAATATTAGCAAAAAGTCAGCAAGTGCTAGTCTTAGTGCCTGAAATAGGGCTTACACCACAAACCCTAAGCCGTTTCG
AACAACGTTTTAATGTACCTATTAGCTTGCATCACTCGGGGTTAAACGATAAAGAGCGTTTACAAACTTGGTTAGAAGCT
CAGCGCGGTACAGCAGCGATTGTAATTGGTACACGTTCAGCTATATTCACACCGCTACATGATCTAGGTCTTATTATTGT
TGATGAAGAGCACGACGCCTCATTCAAACAACAAGACAGTTTTCGCTATCATGCTCGCGACATTGCCATACTAAGAGCCA
GACAACTTGATATCCCTATTATATTAGGCACAGCAACACCAAGTTTTGAATCGCTACAAAATGCCTTAACGGGAAAATAC
CATTATCATCAATTGCGCAAGCGTGCTGGTAATGCCTCAACGGCTAAAATAACCCTTATCGATGTTGCACAGCAACAAAT
GGAACATGGGCTTTCTGGCACCTTAAAGCAAGCCATTAAAAACACCCTTGCCCGTGGCGAGCAAGCCTTAATTTTTCTTA
ATCGTCGGGGTTATGCTCCAGCAATTAATTGTCAAGAATGCCATTGGGTAGCAGATTGTCAGCGTTGCAACAAACCTTAC
ACGCTTCATCAAGGGCAAGGATTACTCATTTGCCATCATTGTGGCAGCCAAAAGCGCATACCTCCTCAATGCCCAAGCTG
TGGAAGCGTACGTATTAAACCAATTGGCCAAGGTACAGAGCAATTAGAAGAAAAAATTAGCAGCCTTTTTCCTGATTACT
CTACCGTAAGAATCGACCGGGATAGCACGCGTAAAAAAGGCGCATTAGCTAAGCTCTTAACCGAAGTGAGTAATAAAGAA
CACCAACTGTTAATTGGTACGCAAATGTTAGCCAAAGGTCATCATTTTCCAGATGTCACCTTAGTAGCGGTACTTGATGT
AGACGGTGCACTTTTTAGTTATGACTTTCGCGCAGCAGAGCATATGGCGCAATTACTTGTTCAGGTATCAGGACGAGCCG
GTAGAGCAAGTAAACCGGGTCGAGTAATGGTGCAAAGTAATTTCCCTGAACATCCTTTATTACAAGATTTAGTCAACAAT
GGTTATCAACATTTTGCTAAACAAGCATTGATAGAGCGCCAACAAGCCTTATTACCACCATTTAGTTTTCAAGCTTTATT
TCGCGCCGACGCTAACTACCCTTCTTATCCAGAAAAGTTTTTACGCGCCATGACAGAAATGCCTTTTGAAGGCTGTCAGT
TTGCGGGTCCTGTTCCTGCAGCAATGGAAAAAAAGGCCGGTAAATTTCGTTTTCACTTAATTTTGCAAGCAAAATCAAGA
AAACAACTGCATCAGGCGGTCTTTAAACTTATTCATCAAAGTGCAAATAATGAATGGCAATCAAAAGTGAGATGGTCAAT
TGATATCGATCCAGTCGACTTGAGTTGGTAA

Domains

Predicted by InterproScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(233-259)

Helicase conserved C-terminal domain (Helicase_C)

(305-376)

DEAD/DEAH box helicase (DEAD)

(9-151)

Primosomal protein N C-terminal domain (PriA_C)

(420-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

49.904

100

0.502

Multiple sequence alignment