Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9I44_RS10835 Genome accession   NZ_CP028386
Coordinates   2102885..2103379 (-) Length   164 a.a.
NCBI ID   WP_003133131.1    Uniprot ID   A0A1I4HNK8
Organism   Lactococcus garvieae strain IBB3403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2097885..2108379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I44_RS10810 (C9I44_10765) recX 2099261..2100094 (+) 834 WP_003133138.1 recombination regulator RecX -
  C9I44_RS10815 (C9I44_10770) - 2100177..2101025 (+) 849 WP_003133137.1 MurR/RpiR family transcriptional regulator -
  C9I44_RS10820 (C9I44_10775) - 2101057..2101365 (+) 309 WP_003133136.1 DUF960 domain-containing protein -
  C9I44_RS10825 (C9I44_10780) - 2101399..2102166 (-) 768 WP_003133135.1 metallophosphoesterase -
  C9I44_RS10830 (C9I44_10785) rpsR 2102526..2102771 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  C9I44_RS10835 (C9I44_10790) ssb 2102885..2103379 (-) 495 WP_003133131.1 single-stranded DNA-binding protein Machinery gene
  C9I44_RS10840 (C9I44_10795) rpsF 2103417..2103710 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  C9I44_RS10845 (C9I44_10800) - 2103897..2104109 (-) 213 WP_016171080.1 hypothetical protein -
  C9I44_RS10850 (C9I44_10805) - 2104580..2106043 (+) 1464 WP_003133128.1 amino acid permease -
  C9I44_RS10855 (C9I44_10810) dnaX 2106077..2107735 (-) 1659 WP_233239255.1 DNA polymerase III subunit gamma/tau -
  C9I44_RS10860 (C9I44_10815) - 2107748..2108368 (-) 621 WP_003133126.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18003.88 Da        Isoelectric Point: 4.9533

>NTDB_id=284593 C9I44_RS10835 WP_003133131.1 2102885..2103379(-) (ssb) [Lactococcus garvieae strain IBB3403]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=284593 C9I44_RS10835 WP_003133131.1 2102885..2103379(-) (ssb) [Lactococcus garvieae strain IBB3403]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATGCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I4HNK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372

Multiple sequence alignment