Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   MAEO_RS04700 Genome accession   NC_009635
Coordinates   957857..958894 (+) Length   345 a.a.
NCBI ID   WP_011973647.1    Uniprot ID   A6UVJ3
Organism   Methanococcus aeolicus Nankai-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 952857..963894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAEO_RS04680 (Maeo_0931) - 953777..954751 (-) 975 WP_011973643.1 methionine synthase -
  MAEO_RS04685 (Maeo_0932) ade 954748..956538 (-) 1791 WP_011973644.1 adenine deaminase -
  MAEO_RS04690 (Maeo_0933) - 956633..957382 (-) 750 WP_011973645.1 HDIG domain-containing metalloprotein -
  MAEO_RS04695 (Maeo_0934) - 957470..957844 (+) 375 WP_011973646.1 cysteine-rich small domain-containing protein -
  MAEO_RS04700 (Maeo_0935) eppA 957857..958894 (+) 1038 WP_011973647.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  MAEO_RS07755 (Maeo_0936) - 959184..959960 (+) 777 WP_394296025.1 DUF5655 domain-containing protein -
  MAEO_RS04710 (Maeo_0937) - 959959..960189 (+) 231 Protein_948 ATP-binding protein -
  MAEO_RS04715 (Maeo_0938) nuoB 960223..960963 (-) 741 WP_011973649.1 NADH-quinone oxidoreductase subunit NuoB -
  MAEO_RS04720 (Maeo_0939) - 960976..962532 (-) 1557 WP_011973650.1 NADH-quinone oxidoreductase subunit C -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39076.92 Da        Isoelectric Point: 7.2597

>NTDB_id=28429 MAEO_RS04700 WP_011973647.1 957857..958894(+) (eppA) [Methanococcus aeolicus Nankai-3]
MISFDYLTIAYIINFILLSIATYTDIKTREIPHIITIIMLIINLPLGFYLFGFEAIWAFLSTLILCLILGIGMGGGDIKL
FTVLAPIFLFAGTILYIPKAILILIGISAGISAFYPMLNILKKYWKEIIPSSAYLAMVLGIIIYIISFYNVPYAILFVWG
YIILSVFISRKVSGYKEFTKKAGFFAPLYLIGLYLLDYNYFVNNQVLLQFLVYVGELSLISIVIYALTGAEISSKKLVKD
LKEGDILRDIITIEGNSVTVEGANILKRFKLMVDAEMGKNETENKKILMTDGEGLYKEDLELLQKLHKEGKIPNELNLIT
TYPFVPFVLVGYVVVLVLHYYFNLF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=28429 MAEO_RS04700 WP_011973647.1 957857..958894(+) (eppA) [Methanococcus aeolicus Nankai-3]
ATGATTAGTTTTGATTATTTAACCATTGCATATATTATTAATTTTATTTTATTGTCCATAGCTACCTACACAGACATAAA
AACAAGGGAAATTCCCCATATAATTACCATCATAATGTTAATTATTAATTTACCTTTGGGATTTTATTTATTTGGATTTG
AGGCAATTTGGGCATTTTTATCAACTTTAATATTATGTTTAATATTGGGTATCGGAATGGGAGGGGGAGATATAAAATTA
TTTACAGTTTTAGCTCCGATTTTCCTATTTGCTGGAACAATATTGTATATTCCAAAGGCAATATTAATATTAATAGGAAT
TAGTGCGGGAATATCTGCATTTTATCCTATGCTAAATATATTGAAAAAATATTGGAAAGAAATAATTCCTTCTTCGGCAT
ATTTGGCAATGGTGTTGGGCATTATTATCTATATAATTAGTTTTTACAATGTTCCATATGCAATATTGTTTGTTTGGGGA
TATATTATATTATCTGTATTCATATCTAGAAAAGTAAGCGGATATAAAGAATTTACAAAAAAGGCAGGATTTTTTGCACC
ATTGTATTTGATTGGGCTGTATTTGTTAGATTATAATTATTTTGTGAATAATCAGGTATTGTTGCAATTTTTGGTCTATG
TTGGGGAATTAAGCCTTATATCAATAGTGATCTATGCCTTAACTGGTGCAGAAATATCCAGTAAAAAATTGGTAAAAGAC
TTAAAAGAGGGAGACATATTACGGGACATTATCACAATTGAAGGAAATTCTGTAACCGTAGAGGGGGCAAATATCTTAAA
AAGATTTAAATTAATGGTAGATGCTGAAATGGGCAAAAATGAAACAGAAAATAAAAAAATATTGATGACAGATGGGGAAG
GACTATATAAGGAGGACTTGGAGCTCCTACAAAAATTACATAAAGAAGGAAAAATACCTAATGAATTAAATTTAATTACA
ACATATCCATTTGTTCCATTTGTATTAGTTGGTTATGTGGTGGTTTTAGTGCTTCATTATTATTTTAATTTATTTTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(13-104)

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(209-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6UVJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

61.047

99.71

0.609

Multiple sequence alignment