Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   C7M30_RS12540 Genome accession   NZ_CP028218
Coordinates   2428886..2429005 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain SRCM102756     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2423886..2434005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS12520 (C7M30_02495) pbpG 2424253..2426328 (-) 2076 WP_017696252.1 transglycosylase domain-containing protein -
  C7M30_RS12525 (C7M30_02496) speE 2426530..2427360 (+) 831 WP_003227543.1 spermidine synthase -
  C7M30_RS12530 (C7M30_02497) speB 2427421..2428293 (+) 873 WP_003227545.1 agmatinase -
  C7M30_RS12535 (C7M30_02498) - 2428331..2428733 (-) 403 Protein_2444 YbaK/EbsC family protein -
  C7M30_RS21960 - 2428654..2428818 (+) 165 WP_250622425.1 hypothetical protein -
  C7M30_RS12540 (C7M30_02499) phrF 2428886..2429005 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  C7M30_RS12545 (C7M30_02500) rapF 2428989..2430134 (-) 1146 WP_086344441.1 response regulator aspartate phosphatase RapF Regulator
  C7M30_RS22195 - 2430137..2430367 (+) 231 WP_041334639.1 hypothetical protein -
  C7M30_RS12555 (C7M30_02501) ywhK 2430364..2431719 (+) 1356 WP_160244513.1 YncE family protein -
  C7M30_RS12560 (C7M30_02502) ywhL 2431759..2433135 (+) 1377 WP_160244514.1 YncE family protein -
  C7M30_RS12565 (C7M30_02503) albG 2433141..2433842 (-) 702 WP_032727070.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=283429 C7M30_RS12540 WP_009968329.1 2428886..2429005(-) (phrF) [Bacillus subtilis strain SRCM102756]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=283429 C7M30_RS12540 WP_009968329.1 2428886..2429005(-) (phrF) [Bacillus subtilis strain SRCM102756]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATCTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment