Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M27_RS17220 Genome accession   NZ_CP028213
Coordinates   3325918..3326367 (+) Length   149 a.a.
NCBI ID   WP_128740012.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3320918..3331367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS17200 (C7M27_03400) hxlR 3322130..3322492 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C7M27_RS17205 (C7M27_03401) hxlA 3322724..3323356 (+) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  C7M27_RS17210 (C7M27_03402) hxlB 3323362..3323919 (+) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  C7M27_RS17215 (C7M27_03403) tlpC 3324029..3325750 (+) 1722 WP_128740013.1 methyl-accepting chemotaxis protein TlpC -
  C7M27_RS17220 (C7M27_03404) nucA/comI 3325918..3326367 (+) 450 WP_128740012.1 DNA-entry nuclease Machinery gene
  C7M27_RS17225 (C7M27_03405) nin/comJ 3326394..3326792 (+) 399 WP_128740011.1 DNA-entry nuclease inhibitor Regulator
  C7M27_RS17230 (C7M27_03406) bglC 3326829..3328262 (-) 1434 WP_021481825.1 6-phospho-beta-glucosidase -
  C7M27_RS17235 (C7M27_03407) - 3328334..3329062 (-) 729 WP_021481826.1 AAA family ATPase -
  C7M27_RS17240 (C7M27_03408) - 3329081..3329422 (-) 342 WP_032724911.1 DUF3147 family protein -
  C7M27_RS17245 (C7M27_03409) - 3329410..3329832 (-) 423 WP_170939093.1 MarR family transcriptional regulator -
  C7M27_RS17250 (C7M27_03410) yckD 3329961..3330293 (-) 333 WP_128740010.1 YckD family protein -
  C7M27_RS17255 (C7M27_03411) yckC 3330376..3330831 (-) 456 WP_076458396.1 RDD family protein -
  C7M27_RS17260 - 3330851..3331048 (-) 198 WP_122060560.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16484.45 Da        Isoelectric Point: 4.5282

>NTDB_id=283209 C7M27_RS17220 WP_128740012.1 3325918..3326367(+) (nucA/comI) [Bacillus subtilis strain SRCM102749]
MNITTDIIKTILLVIVIIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDSTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=283209 C7M27_RS17220 WP_128740012.1 3325918..3326367(+) (nucA/comI) [Bacillus subtilis strain SRCM102749]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACAGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment