Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M19_RS04545 Genome accession   NZ_CP028205
Coordinates   981759..982499 (-) Length   246 a.a.
NCBI ID   WP_160223505.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102741     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 976759..987499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M19_RS04520 (C7M19_00918) mreC 977195..978058 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  C7M19_RS04525 (C7M19_00919) mreB 978089..979102 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  C7M19_RS04530 (C7M19_00920) radC 979194..979889 (-) 696 WP_007408165.1 RadC family protein -
  C7M19_RS04535 (C7M19_00921) - 979921..980490 (-) 570 WP_007408164.1 Maf family protein -
  C7M19_RS04540 (C7M19_00922) - 980631..981632 (-) 1002 WP_160223199.1 SPOR domain-containing protein -
  C7M19_RS04545 (C7M19_00923) comC 981759..982499 (-) 741 WP_160223505.1 prepilin peptidase Machinery gene
  C7M19_RS04550 (C7M19_00924) - 982639..983931 (-) 1293 WP_160223200.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  C7M19_RS04555 (C7M19_00925) - 983990..986632 (-) 2643 WP_044801613.1 valine--tRNA ligase -
  C7M19_RS04560 (C7M19_00926) - 987085..987276 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 26822.42 Da        Isoelectric Point: 9.2570

>NTDB_id=282552 C7M19_RS04545 WP_160223505.1 981759..982499(-) (comC) [Bacillus velezensis strain SRCM102741]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFSFYIK
LASGGA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=282552 C7M19_RS04545 WP_160223505.1 981759..982499(-) (comC) [Bacillus velezensis strain SRCM102741]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGTGCTCATTGC
ATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTAAAAAGCAGCCAT
TTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCGTTTTACATCAAG
CTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

100

0.581

Multiple sequence alignment