Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PST_RS02580 Genome accession   NC_009434
Coordinates   560181..561677 (-) Length   498 a.a.
NCBI ID   WP_011911734.1    Uniprot ID   A4VGV5
Organism   Stutzerimonas stutzeri A1501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 555181..566677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST_RS02570 (PST_0498) - 556401..558038 (+) 1638 WP_011911732.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  PST_RS02575 (PST_0499) - 558078..560051 (-) 1974 WP_011911733.1 BCCT family transporter -
  PST_RS02580 (PST_0500) comM 560181..561677 (-) 1497 WP_011911734.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PST_RS02585 - 561714..561974 (-) 261 WP_013981620.1 accessory factor UbiK family protein -
  PST_RS02590 (PST_0502) glnK 562371..562709 (+) 339 WP_003096476.1 P-II family nitrogen regulator -
  PST_RS02595 (PST_0503) - 562748..564064 (+) 1317 WP_011911736.1 ammonium transporter -
  PST_RS02600 (PST_0504) - 564181..565431 (+) 1251 WP_041755263.1 ammonium transporter -
  PST_RS02605 (PST_0505) - 565533..565958 (+) 426 WP_011911738.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PST_RS02610 (PST_0506) sutA 566036..566365 (+) 330 WP_011911739.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53127.05 Da        Isoelectric Point: 7.7464

>NTDB_id=27957 PST_RS02580 WP_011911734.1 560181..561677(-) (comM) [Stutzerimonas stutzeri A1501]
MSLAIVHSRAQIGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGERLEQLECLGELALSGALRPIQGVLPAALAARAAGRALLVPRANAEEASLASGLTVFAAEHL
LEVAAHFNGVTPLEPYVAQGLLRQVQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLQHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNAAPQT
GQSSAVLAAQVAEARRLQLARQGCANAFLDLVGLREHCQLTAEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAER
IGRQHLAEALQYRPGSQA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=27957 PST_RS02580 WP_011911734.1 560181..561677(-) (comM) [Stutzerimonas stutzeri A1501]
ATGTCCCTGGCCATCGTCCATAGCCGCGCTCAGATCGGCGTCGAAGCCCCGGCGGTGACCGTCGAGGCGCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCCGTCAAGGAGAGCAAGGACCGGGTGCGCAGCGCCATCC
TGACCTCCGGTTTCGATTTCCCCGCCCGACGCATCACGCTCAATCTCGCCCCTGCCGATCTGCCCAAGGACGGTGGTCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTCGCCGCCAGCGGACAGCTGCCCGGCGAACGTCTGGAGCAGCTGGAATGCCT
GGGCGAACTGGCGTTGTCCGGCGCCTTGCGCCCGATCCAGGGCGTGCTGCCGGCCGCCCTCGCCGCGCGTGCCGCCGGCC
GTGCGCTGCTGGTGCCGCGAGCCAATGCCGAGGAAGCCAGCCTCGCCTCGGGCCTGACCGTGTTTGCCGCCGAGCATCTG
CTGGAAGTTGCCGCCCACTTCAACGGCGTTACTCCGCTCGAGCCCTACGTGGCCCAGGGGCTGCTGCGGCAGGTCCAGCC
CTACCCCGACCTGGCCGACGTACAGGGCCAGCAGGCGGCCAAACGCGGCCTGCTGATCGCCGCGGCCGGCGCACACAACC
TGCTGTTCTCCGGACCGCCCGGCACCGGCAAGACGCTATTGGCCAGCCGTCTGCCCGGCCTGCTGCCGCCGCTGGATGAG
CAGGAGGCGCTGGAAGTGGCCGCGATTCATTCGGTGGCCAGCCACAGCCCGCTGCAGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCCCATCACAGTGCATCGGGCCCGGCACTGGTGGGTGGCGGCAGCCGGCCGCAACCGGGCGAGATCACCCTGGCGC
ATCAGGGTGTGCTGTTTCTCGACGAGCTACCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCACTGGAATCG
GGCCATATCGTCATCGCCCGGGCGCGGGACAAGGTGCGTTTTCCGGCGCGCTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCGTGCGGCTATCTGGGCGACCCTAATGGTCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGACCGCTGCTCGACCGCATCGACCTGCATCTGACCGTGGCGCGCGAGGCCACCGCCCTCAACGCAGCGCCACAGACC
GGCCAGAGCAGCGCCGTGCTCGCCGCACAGGTGGCCGAGGCGCGGCGACTGCAACTCGCCCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGGTCGGCCTGCGTGAGCACTGCCAGCTTACCGCCGAGGATCAGGCCTGGCTGGAGCGCGCCTGCGAGC
GTCTCGCACTGTCCCTGCGCGCCGCACACCGGTTGCTCAAGGTCGCACGTACCCTGGCCGACCTGGAGCAGGCCGAACGC
ATCGGCCGGCAACATCTGGCCGAAGCGCTGCAATATCGCCCCGGCAGCCAGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4VGV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.578

100

0.56
  comM Vibrio campbellii strain DS40M4

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

54.89

100

0.552
  comM Legionella pneumophila str. Paris

50.791

100

0.516
  comM Legionella pneumophila strain ERS1305867

50.791

100

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.468

Multiple sequence alignment