Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMC_RS00245 Genome accession   NC_008767
Coordinates   51981..52445 (+) Length   154 a.a.
NCBI ID   WP_011798742.1    Uniprot ID   -
Organism   Neisseria meningitidis FAM18     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46981..57445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMC_RS00245 (NMC0041) comE 51981..52445 (+) 465 WP_011798742.1 ComEA family DNA-binding protein Machinery gene
  NMC_RS00255 (NMC0043) dnaJ 52714..53835 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  NMC_RS00260 (NMC0044) - 54031..56049 (+) 2019 WP_002224367.1 OPT family oligopeptide transporter -
  NMC_RS00265 (NMC0045) rfbC 56093..56650 (-) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16605.84 Da        Isoelectric Point: 10.8773

>NTDB_id=27218 NMC_RS00245 WP_011798742.1 51981..52445(+) (comE) [Neisseria meningitidis FAM18]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=27218 NMC_RS00245 WP_011798742.1 51981..52445(+) (comE) [Neisseria meningitidis FAM18]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment