Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2I18_RS04345 Genome accession   NZ_CP026029
Coordinates   940546..940983 (+) Length   145 a.a.
NCBI ID   WP_249900064.1    Uniprot ID   -
Organism   Paenibacillus sp. PK3_47     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 935546..945983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I18_RS04315 (C2I18_04250) - 936069..936749 (-) 681 WP_249900058.1 M15 family metallopeptidase -
  C2I18_RS04320 - 936878..937033 (+) 156 WP_249900059.1 hypothetical protein -
  C2I18_RS04325 (C2I18_04255) - 937105..937440 (-) 336 WP_249900060.1 YolD-like family protein -
  C2I18_RS04330 (C2I18_04260) - 937637..938215 (-) 579 WP_249900061.1 hypothetical protein -
  C2I18_RS04335 (C2I18_04265) - 938408..939886 (-) 1479 WP_249900062.1 glycosyl hydrolase -
  C2I18_RS04340 (C2I18_04270) - 940001..940417 (-) 417 WP_249900063.1 cytidine deaminase -
  C2I18_RS04345 (C2I18_04275) nucA/comI 940546..940983 (+) 438 WP_249900064.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C2I18_RS29705 - 941047..941130 (-) 84 WP_342760351.1 YjcZ family sporulation protein -
  C2I18_RS04355 (C2I18_04285) - 941410..941586 (+) 177 WP_249900066.1 YjfB family protein -
  C2I18_RS04360 (C2I18_04290) - 941689..942240 (+) 552 WP_249900067.1 ImmA/IrrE family metallo-endopeptidase -
  C2I18_RS04365 (C2I18_04295) - 942341..942520 (-) 180 WP_249900068.1 hypothetical protein -
  C2I18_RS04370 (C2I18_04300) - 942673..942933 (+) 261 WP_249900069.1 hypothetical protein -
  C2I18_RS04375 - 943079..943213 (-) 135 WP_249902000.1 YjcZ family sporulation protein -
  C2I18_RS04380 (C2I18_04305) - 943350..943604 (-) 255 WP_249900070.1 hypothetical protein -
  C2I18_RS04385 (C2I18_04310) - 943724..944878 (-) 1155 WP_249900071.1 epoxide hydrolase family protein -
  C2I18_RS04390 (C2I18_04315) - 945105..945323 (-) 219 WP_249900072.1 hypothetical protein -
  C2I18_RS04395 (C2I18_04320) - 945622..945807 (+) 186 WP_249900073.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16131.20 Da        Isoelectric Point: 4.3143

>NTDB_id=265207 C2I18_RS04345 WP_249900064.1 940546..940983(+) (nucA/comI) [Paenibacillus sp. PK3_47]
MKRKKLIPSLIIIVLLALAAYLFEENGIVIDQPPAKDSEVVQLVFPSDRYPETAEHIQEAIQSGESAICTIDREQAEDNR
KESLKGVPTKKGYDRDEWPMAMCAEGGAGADIEYITPSDNRGAGSWVGNQLEEYPDGTRVKFIFE

Nucleotide


Download         Length: 438 bp        

>NTDB_id=265207 C2I18_RS04345 WP_249900064.1 940546..940983(+) (nucA/comI) [Paenibacillus sp. PK3_47]
GTGAAAAGAAAGAAACTCATCCCCAGCCTCATTATCATTGTGTTACTCGCGCTGGCCGCTTACTTATTCGAGGAGAACGG
CATAGTAATTGATCAGCCGCCTGCAAAAGATTCTGAGGTTGTGCAGCTCGTGTTCCCATCGGACCGTTACCCGGAGACAG
CGGAGCACATTCAGGAGGCTATCCAGAGCGGAGAATCCGCAATCTGTACGATCGACAGGGAGCAGGCGGAAGACAACCGC
AAGGAATCCCTGAAGGGTGTTCCGACCAAAAAAGGCTATGACCGTGATGAATGGCCGATGGCCATGTGCGCGGAGGGCGG
AGCCGGAGCAGATATAGAATATATAACGCCAAGCGACAACCGCGGGGCCGGAAGCTGGGTCGGCAATCAGCTGGAGGAGT
ATCCGGACGGGACCCGGGTGAAGTTTATATTCGAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.961

71.034

0.483

Multiple sequence alignment