Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C1S76_RS12915 Genome accession   NZ_CP025796
Coordinates   2707400..2709148 (+) Length   582 a.a.
NCBI ID   WP_045412013.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702400..2714148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS12895 pilM 2704696..2705712 (+) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  C1S76_RS12900 pilN 2705696..2706274 (+) 579 WP_005438427.1 PilN domain-containing protein Machinery gene
  C1S76_RS12905 pilO 2706267..2706860 (+) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S76_RS12910 pilP 2706850..2707365 (+) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  C1S76_RS12915 pilQ 2707400..2709148 (+) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  C1S76_RS12920 aroK 2709338..2709856 (+) 519 WP_005438434.1 shikimate kinase AroK -
  C1S76_RS12925 aroB 2709888..2710988 (+) 1101 WP_005438436.1 3-dehydroquinate synthase -
  C1S76_RS12930 - 2711042..2712535 (+) 1494 WP_045412010.1 SPOR domain-containing protein -
  C1S76_RS12935 - 2712605..2713444 (+) 840 WP_020196767.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63877.96 Da        Isoelectric Point: 4.5124

>NTDB_id=263889 C1S76_RS12915 WP_045412013.1 2707400..2709148(+) (pilQ) [Vibrio owensii strain 051011B]
MKMRQGLTLTPRKLAGIFSLWFFLLLAPFVAAQEVKSNSLKTIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESIEIFRDTSTTRLVAYIDEEYTHDYRLTGRYLEIKVGKIKANEKAPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGEDGGSSVGIDDFLNVNLAATSPNA
TSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=263889 C1S76_RS12915 WP_045412013.1 2707400..2709148(+) (pilQ) [Vibrio owensii strain 051011B]
ATGAAAATGAGACAAGGATTAACACTGACACCAAGGAAGCTAGCAGGGATCTTCTCTTTGTGGTTCTTTTTACTTTTAGC
CCCTTTCGTAGCAGCACAGGAAGTAAAGTCTAACTCGCTAAAGACCATCGACTTTCGTACAAACAAAGACAAAGATGCCG
TGATTGTTGTAGAACTTGCTTCTCCTGCAGCAATCGTTGATATCAAGCGCGTACAGGAAGGGTTGAGTATCGACTTACTC
AACACATCTGTAAAAGACGACCAGCTTTACCTTCTGGATGTAAAAGACTTTTCTACTGTCGTCGAGAGTATTGAAATATT
CCGAGATACCTCAACCACACGGTTAGTTGCTTATATTGATGAGGAATACACTCACGATTACCGTCTGACTGGGCGTTACC
TAGAGATCAAAGTCGGTAAGATAAAAGCCAATGAAAAAGCACCGGATAAGAGCATTCTAGAAAAAGAAGGGAAGCTGATT
TCAATTAACTTCCAAGACATCCCAGTGCGAAACGTATTGCAACTCATCGCCGACTACAACCAATTTAACTTAGTGGTATC
TGACTCCGTTGAAGGCAACTTAACTTTGCGTCTTGATGGTGTGCCTTGGCAGCAAGTGCTCGATATCATTCTTCAAGTAA
AAGGCTTGGATAAGCGTGTAGATGGCAACGTGATTTTGGTGGCGCCGAAAGACGAACTGGATCTGCGTGAAAAGCAACAA
TTAGAGAAACAGAAACTTGAGCAGGAGATGGGGGAGCTTTCTTCTGAGATCATCAAAGTTAACTTTGCGAAAGCGTCGGA
CATTGCTGAGATGATTAATGGCGAGGGGAATATCAGTATGCTCTCAGAACGTGGCAGCATGACCATTGATGAGCGGACGA
ACTCACTATTAATTAGAGAACTACCAGAGAACATTGAGGTTATCCGAGAGATCATTGAGTCTTTGGATATTCCGGTCAAA
CAAGTTCAGATTGAAGCGCGAATCGTCACCATCAATGAAGGTAATATGGACGAACTTGGTGTGCGTTGGGGCTTTACCTC
TATCAACGGCAGCCACACTGTCGGTGGTTCGATTGAGAATAACCTTGCGACAATCGGCCTGTACGATGGCGGCGGTGATG
GCGAAGGTGAAGATGGTGGCAGCAGTGTTGGTATTGATGACTTCCTAAACGTGAACTTGGCTGCAACCAGCCCGAATGCA
ACCAGTCTTGCTTTCCAAGTTGCGAAATTAGGCTCAGACACACTGCTTGATTTAGAGCTTTCTGCGCTGCAACAAGAATC
CAAGGCAGAGATCATTTCGAGCCCGAGATTGATTACCACTAACAAGAAGCCTGCTTATATCGAGCAAGGTACCGAAATCC
CGTACCTTGAGTCCTCTTCCAGTGGAGCAACGTCTGTCACGTTTAAAAAAGCCGTATTGAGCTTAAAAGTGACACCACAA
ATTACTCCTGACAATCGTTTAGTGTTGGATTTGAGCGTTACGCAAGACAGACCGGGCCAAGTTGTAAAAACAGGCACAGG
TGAAGCGGTCGCGATCGATACTCAACGCATTGGCACACAAGTTTTAGTCAATAACGGTGAAACGGTTGTGTTGGGTGGTA
TTTTTCAACATAGCATCACAAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCGCTGTTAGGGGCACTTTTTCGT
CGAAGTTATGAAAATGTCGGCAAAAGTGAACTGTTGATTTTTGTCACGCCTAAAGTTGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(422-580)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

95.876

100

0.959
  pilQ Vibrio cholerae strain A1552

76.761

97.595

0.749
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.761

97.595

0.749
  pilQ Pseudomonas aeruginosa PAK

40.522

98.797

0.4
  pilQ Legionella pneumophila strain ERS1305867

40.998

96.392

0.395
  pilQ Legionella pneumophila strain Lp02

40.998

96.392

0.395
  pilQ Acinetobacter baumannii D1279779

37.018

100

0.38
  pilQ Acinetobacter baumannii strain A118

37.018

100

0.38
  comQ Acinetobacter baylyi ADP1

37.177

99.828

0.371

Multiple sequence alignment