Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   C1S76_RS12895 Genome accession   NZ_CP025796
Coordinates   2704696..2705712 (+) Length   338 a.a.
NCBI ID   WP_045412016.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699696..2710712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS12880 - 2700068..2700796 (-) 729 WP_005438421.1 redoxin family protein -
  C1S76_RS12885 oxyR 2700972..2701880 (+) 909 WP_033005806.1 DNA-binding transcriptional regulator OxyR -
  C1S76_RS12890 - 2701947..2704517 (-) 2571 WP_045412019.1 penicillin-binding protein 1A -
  C1S76_RS12895 pilM 2704696..2705712 (+) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  C1S76_RS12900 pilN 2705696..2706274 (+) 579 WP_005438427.1 PilN domain-containing protein Machinery gene
  C1S76_RS12905 pilO 2706267..2706860 (+) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S76_RS12910 pilP 2706850..2707365 (+) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  C1S76_RS12915 pilQ 2707400..2709148 (+) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  C1S76_RS12920 aroK 2709338..2709856 (+) 519 WP_005438434.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38002.31 Da        Isoelectric Point: 6.0152

>NTDB_id=263885 C1S76_RS12895 WP_045412016.1 2704696..2705712(+) (pilM) [Vibrio owensii strain 051011B]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKERIVAENNTINHQEIVKTLKEMRKELPIRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVMQAFAHQSPFPVEELSLDFVKVDTDEQMGGTESYQVFATRREVVESRVETLTKSGLKTV
LVDVHSQSLGHIWKLTAERFPEKNKHCLLDIGAMSSSFTMFTEQGELFHKEFPCGTRTTNDLSQHDPLSDDIQTATEEFN
RQMVERVKRQMQLYTSFNGSQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLSLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDDAASH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=263885 C1S76_RS12895 WP_045412016.1 2704696..2705712(+) (pilM) [Vibrio owensii strain 051011B]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCTTTATTGGGTTACAAAGAAATAATACTTAAGGAACGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAGAAAAGAGCTCCCAATTCGAGCTAGAAAGGTCGCAATTTCGGTTCCAGACAATGCC
GTGATCAGCAAAAAGCTACAAATAGAGCAGAACCTAGAAGAAAGCGAAAAGGAATTTGCGGTGATGCAAGCCTTTGCGCA
TCAGTCTCCCTTTCCGGTTGAAGAGCTCAGCCTCGACTTTGTAAAGGTTGATACGGATGAGCAGATGGGCGGCACAGAGA
GCTACCAAGTGTTTGCAACACGCAGAGAGGTGGTGGAAAGCCGAGTGGAGACATTAACAAAGTCTGGCCTAAAAACCGTG
CTGGTGGATGTGCACTCACAAAGTCTTGGTCATATATGGAAGCTAACCGCAGAACGTTTTCCAGAAAAGAATAAGCATTG
CTTGTTGGACATTGGTGCGATGAGCAGCTCTTTCACTATGTTTACCGAGCAAGGAGAGTTATTCCATAAGGAGTTTCCTT
GCGGTACCCGCACAACAAACGATTTGTCTCAACACGATCCACTCAGTGACGATATTCAAACCGCAACTGAAGAGTTCAAT
CGACAAATGGTTGAACGTGTTAAGCGTCAGATGCAGCTCTACACCTCGTTCAATGGTAGCCAAGATATCAAAGGCATTTG
GCTTTCCGGTGAGGGGGCGGCTACGCCAATGTTAGCTGAGGAACTATCAAGTCAATTGGCACTAGAGTGTGAACTTCTCA
ATCCTCTTAGTTTGTTTGAAATGAAAGTCTCTAAACGTAAACGCCGAGCTGCAGATTGGCAGCATTTCACGGCAGCTGCA
GGTTTAGCTGTGCGCGGTATTCAATGGTTGGGAGGTGACGATGCTGCATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

89.053

100

0.891
  pilM Vibrio cholerae strain A1552

47.989

100

0.494

Multiple sequence alignment