Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CAB17_RS02080 Genome accession   NZ_CP025491
Coordinates   455092..456156 (+) Length   354 a.a.
NCBI ID   WP_101901588.1    Uniprot ID   A0A2H5FR09
Organism   Legionella sainthelensi strain LA01-117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 450092..461156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB17_RS02070 (CAB17_08695) - 450837..453203 (-) 2367 WP_101899781.1 penicillin-binding protein 1A -
  CAB17_RS02075 (CAB17_08700) - 453431..454855 (-) 1425 WP_101899782.1 M protein -
  CAB17_RS02080 (CAB17_08705) pilM 455092..456156 (+) 1065 WP_101901588.1 type IV pilus assembly protein PilM Machinery gene
  CAB17_RS02085 (CAB17_08710) pilN 456161..456724 (+) 564 WP_101899783.1 PilN domain-containing protein Machinery gene
  CAB17_RS02090 (CAB17_08715) pilO 456721..457320 (+) 600 WP_101899784.1 type 4a pilus biogenesis protein PilO Machinery gene
  CAB17_RS02095 (CAB17_08720) pilP 457317..457823 (+) 507 WP_101899785.1 pilus assembly protein PilP Machinery gene
  CAB17_RS02100 (CAB17_08725) pilQ 457832..459937 (+) 2106 Protein_416 type IV pilus secretin PilQ -
  CAB17_RS02105 (CAB17_08730) aroK 460261..460788 (+) 528 WP_003632469.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38980.95 Da        Isoelectric Point: 4.8176

>NTDB_id=261973 CAB17_RS02080 WP_101901588.1 455092..456156(+) (pilM) [Legionella sainthelensi strain LA01-117]
MLQLLQPQHRSTLGIDITSTAVKILEISGKNGDLVIENYGRELLPPNAMDGNVIKDLDAVSQCVKKIVDRLHTPCKQAAL
AVPDAAIISKVVQINEGLNDEEMEELIATEADKYIPYPIEEINLDFEVLGPYQKNPHLLDVLIVASRAENVNQRVGIATA
AGLEAVVVDVESYAVERAAQRIASDLPGLGNEKTIAIIDIGACYTHLFVLHKMKLVYSREEKFGDKQLVESIAERYKITL
EEATVARDKKQLPSNYETEVLEPFKENILLQIKRTLQFFYSTNPEGEVDHILLAGGLARLPGLVTLVKDRLGKAAAIANP
LSYMTPSKKIHLDDINNDAPALMVACGLALRNVE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=261973 CAB17_RS02080 WP_101901588.1 455092..456156(+) (pilM) [Legionella sainthelensi strain LA01-117]
ATGCTTCAATTATTGCAACCCCAGCATCGTTCAACTCTTGGAATAGACATAACATCCACAGCAGTCAAAATATTAGAAAT
CTCAGGTAAGAATGGTGATCTTGTTATTGAGAATTACGGACGTGAACTATTGCCACCCAATGCAATGGATGGAAATGTTA
TCAAGGATCTCGATGCTGTCTCTCAATGTGTTAAAAAAATAGTTGACCGATTGCATACCCCGTGTAAGCAAGCTGCATTG
GCTGTGCCAGATGCGGCGATAATTAGTAAAGTAGTGCAAATTAATGAAGGCTTAAATGATGAGGAGATGGAGGAGCTTAT
CGCGACTGAGGCTGATAAATATATTCCTTATCCAATTGAAGAAATTAATCTTGATTTCGAGGTTTTGGGGCCCTATCAGA
AAAACCCACATTTACTTGATGTGCTTATCGTTGCTTCGCGAGCGGAAAATGTCAACCAGCGTGTTGGAATAGCTACGGCT
GCGGGTTTAGAGGCTGTAGTAGTAGATGTTGAATCTTACGCAGTGGAGCGAGCAGCACAACGAATAGCTTCAGATTTACC
AGGACTTGGTAACGAAAAGACCATTGCTATTATTGATATTGGGGCATGTTATACTCATTTATTCGTGTTGCATAAAATGA
AATTAGTTTATTCTCGAGAAGAAAAATTTGGCGATAAGCAATTAGTTGAATCAATTGCTGAGCGCTATAAAATAACCTTA
GAGGAGGCAACAGTTGCCAGGGATAAAAAACAATTACCTTCTAATTATGAAACAGAAGTTTTAGAGCCTTTTAAAGAAAA
TATCTTGTTGCAGATTAAGAGGACGTTGCAGTTTTTTTATTCTACAAACCCAGAAGGAGAGGTTGATCATATTCTATTGG
CTGGGGGATTAGCAAGATTACCAGGCTTAGTTACTCTAGTTAAAGACCGATTAGGAAAAGCAGCTGCTATCGCTAATCCA
CTTTCATATATGACCCCAAGTAAAAAAATCCATTTGGACGACATAAATAATGATGCGCCCGCACTTATGGTTGCTTGTGG
CTTAGCATTAAGAAATGTAGAGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5FR09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

66.102

100

0.661
  pilM Acinetobacter baumannii D1279779

43.22

100

0.432
  comM Acinetobacter nosocomialis M2

43.22

100

0.432
  comM Acinetobacter baylyi ADP1

40.678

100

0.407

Multiple sequence alignment