Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CXR48_RS07040 Genome accession   NZ_CP025341
Coordinates   1373626..1374222 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368626..1379222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS07010 - 1368840..1369295 (+) 456 WP_024085239.1 flavodoxin -
  CXR48_RS07015 dapD 1369377..1370087 (+) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CXR48_RS07020 - 1370158..1371282 (+) 1125 WP_024085240.1 N-acetyldiaminopimelate deacetylase -
  CXR48_RS07025 - 1371343..1371588 (+) 246 WP_003154596.1 YkuS family protein -
  CXR48_RS07030 - 1371622..1372428 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  CXR48_RS07035 - 1372716..1373174 (+) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  CXR48_RS07040 rok 1373626..1374222 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  CXR48_RS07045 - 1374243..1375235 (-) 993 WP_003154589.1 hypothetical protein -
  CXR48_RS07050 - 1375381..1375983 (+) 603 WP_024085242.1 molybdenum cofactor guanylyltransferase -
  CXR48_RS07055 - 1376035..1377054 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  CXR48_RS07060 glp 1377072..1378364 (+) 1293 WP_063174789.1 gephyrin-like molybdotransferase Glp -
  CXR48_RS07065 mobB 1378325..1378846 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=260160 CXR48_RS07040 WP_003154591.1 1373626..1374222(+) (rok) [Bacillus velezensis strain CMT-6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=260160 CXR48_RS07040 WP_003154591.1 1373626..1374222(+) (rok) [Bacillus velezensis strain CMT-6]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCAGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATCTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment