Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   CS557_RS14125 Genome accession   NZ_CP024632
Coordinates   3004687..3005013 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain lzh-X15     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999687..3010013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS14105 (CS557_14110) - 2999943..3000554 (-) 612 WP_099949312.1 FHA domain-containing protein -
  CS557_RS14110 (CS557_14115) gspD 3000618..3002873 (-) 2256 WP_004916953.1 type II secretion system secretin GspD -
  CS557_RS14115 (CS557_14120) - 3002915..3003763 (-) 849 WP_099949313.1 type II secretion system protein N -
  CS557_RS14120 (CS557_14125) gspN 3003763..3004506 (-) 744 WP_005403545.1 type II secretion system protein N -
  CS557_RS14125 (CS557_14130) hns 3004687..3005013 (-) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  CS557_RS14130 (CS557_14135) - 3005396..3005827 (-) 432 WP_099949314.1 acyl-CoA thioesterase -
  CS557_RS14135 (CS557_14140) - 3005836..3007029 (-) 1194 WP_099949315.1 hypothetical protein -
  CS557_RS14140 (CS557_14145) - 3007036..3007866 (-) 831 WP_099949316.1 hypothetical protein -
  CS557_RS14145 (CS557_14150) - 3007863..3008639 (-) 777 WP_099949317.1 uroporphyrinogen-III synthase -
  CS557_RS14150 (CS557_14155) hemC 3008641..3009558 (-) 918 WP_099949318.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=254602 CS557_RS14125 WP_004958548.1 3004687..3005013(-) (hns) [Acinetobacter junii strain lzh-X15]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=254602 CS557_RS14125 WP_004958548.1 3004687..3005013(-) (hns) [Acinetobacter junii strain lzh-X15]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCTCGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907

Multiple sequence alignment