Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CHF41_RS03760 Genome accession   NZ_CP022680
Coordinates   744140..746101 (+) Length   653 a.a.
NCBI ID   WP_119876059.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 739140..751101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS03745 sufU 740130..740561 (+) 432 WP_119876056.1 Fe-S cluster assembly sulfur transfer protein SufU -
  CHF41_RS03750 sufB 740598..742010 (+) 1413 WP_119876057.1 Fe-S cluster assembly protein SufB -
  CHF41_RS03755 - 742546..743778 (-) 1233 WP_119876058.1 serine hydrolase -
  CHF41_RS03760 amiA 744140..746101 (+) 1962 WP_119876059.1 peptide ABC transporter substrate-binding protein Regulator
  CHF41_RS03765 amiA3 746295..748274 (+) 1980 WP_119876060.1 peptide ABC transporter substrate-binding protein Regulator
  CHF41_RS03770 amiC 748338..749834 (+) 1497 WP_119876061.1 ABC transporter permease Regulator
  CHF41_RS03775 amiD 749834..750760 (+) 927 WP_119876062.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72037.37 Da        Isoelectric Point: 4.7561

>NTDB_id=241565 CHF41_RS03760 WP_119876059.1 744140..746101(+) (amiA) [Streptococcus respiraculi strain HTS25]
MKTKKWLVTAGVLVSAGVLLAACGGGSSSSSENTYSYVYTTDPDTLDYTISNRASTSEVVSNLVDGLLENDQYGNLVPSL
AEDWTVSKDGLTYTYKLRKDAKWFTSEGEEYADVKAQDFVTGLKHAIDSKSEALYIVEDSIKGLKDYAEGKTKDFGSVGV
KAVDDYTVEYTLNAPESYWNSKTTMGILFPVNEEFLKSKGSDFGSAKADSILSNGPFLLKSWVAKSSMEYAKNPNYYDKD
NVHIDTVKLSFFDGSDLESLARNFKDGAYSGAALFPTTTSYPAIEKEFKDNIYVSQQNATSYYLNYNLDRKSYKYTSKKD
DAQKAATNEAILNKNFRQAIKFALDKTSMGAQMNGEKLANATLRNTLVPPSFVSIGNKTYGEVVSENLVSYGTEWADVNL
ADATNAYYSPTKAKEKIAKAKAELEAKGVQFPIHLDILVVETDKSDVARKSSIKQSIEASLGTENVVIDLQNASEDDVQN
ATYFATTAAQKDYDLVISGWGPDYQDPSTYLDILNTENGGMLQNIGLEPGVENAKIQAVGLDKYTNMLKEADKEQDVKAR
YEKYAEAEAWLQDSALIIPTVSQGGRPQLSKVVPFSSPVSDVGTKGDVTVFKYKKVQKDVVTVKDYEAAREKWLKEKAES
NAKYQEDLSKHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=241565 CHF41_RS03760 WP_119876059.1 744140..746101(+) (amiA) [Streptococcus respiraculi strain HTS25]
ATGAAAACAAAGAAATGGCTTGTAACAGCAGGTGTTCTCGTGAGCGCAGGAGTACTTCTTGCGGCTTGTGGTGGAGGATC
AAGTAGCTCTAGTGAAAATACTTATTCCTATGTTTATACGACAGACCCAGACACCTTGGACTATACGATTAGTAATCGTG
CCTCAACTTCTGAGGTGGTCAGCAACTTGGTTGATGGATTGCTCGAAAACGACCAGTATGGAAACTTAGTGCCATCCTTA
GCTGAGGATTGGACTGTTTCAAAAGACGGCTTGACCTATACCTACAAACTCCGCAAAGATGCCAAATGGTTCACCTCTGA
GGGAGAAGAGTATGCAGATGTCAAAGCCCAAGACTTTGTCACTGGATTGAAACACGCTATCGATTCGAAATCAGAAGCTC
TTTACATCGTTGAAGATTCTATCAAAGGTTTGAAAGACTATGCTGAAGGAAAAACAAAAGATTTCGGCAGTGTTGGTGTT
AAAGCTGTTGATGATTATACGGTCGAATACACTTTGAACGCCCCTGAGTCTTATTGGAATTCAAAAACAACCATGGGAAT
TCTCTTCCCAGTCAATGAAGAGTTCTTGAAATCAAAAGGGAGCGATTTTGGATCTGCTAAGGCAGACAGTATCCTATCAA
ACGGACCATTCCTCTTGAAGTCATGGGTTGCTAAATCTTCTATGGAATATGCAAAAAACCCAAATTACTACGACAAGGAC
AATGTTCATATTGATACTGTCAAACTGTCTTTCTTCGATGGCTCAGATTTAGAGTCGTTAGCTCGTAATTTCAAAGACGG
GGCTTATTCAGGAGCTGCTCTATTCCCAACTACTACTAGTTATCCTGCAATTGAAAAAGAATTCAAAGATAATATCTATG
TTTCTCAACAAAATGCAACTAGCTACTACTTGAACTACAACTTAGATAGGAAATCCTATAAGTATACTTCTAAGAAAGAT
GATGCTCAGAAGGCGGCAACAAACGAAGCAATTTTAAATAAAAACTTCCGTCAAGCGATTAAGTTTGCTCTTGATAAGAC
TTCTATGGGTGCGCAAATGAACGGTGAGAAGTTGGCTAATGCCACTCTTCGGAATACCCTTGTACCACCAAGTTTTGTCT
CAATTGGAAATAAGACGTATGGAGAGGTTGTTAGTGAGAATCTAGTGTCTTACGGTACAGAGTGGGCAGATGTCAATTTG
GCCGATGCGACCAATGCTTACTACAGTCCGACAAAAGCCAAAGAAAAAATTGCAAAGGCTAAAGCTGAGTTGGAAGCAAA
AGGGGTGCAATTCCCAATCCATCTAGATATTTTAGTTGTTGAAACAGATAAGAGTGATGTGGCTAGAAAGAGCTCGATTA
AACAGTCTATTGAAGCTTCTCTTGGAACAGAAAATGTCGTGATTGACCTCCAAAACGCCTCTGAAGATGATGTTCAAAAT
GCAACTTACTTTGCGACAACAGCTGCTCAAAAAGATTATGACTTGGTTATCTCCGGATGGGGGCCTGACTATCAAGATCC
ATCTACATATCTAGACATCTTAAATACAGAAAATGGTGGAATGCTCCAAAACATCGGTTTAGAACCAGGCGTGGAAAACG
CTAAGATTCAAGCTGTTGGTTTGGATAAATACACTAATATGCTAAAAGAAGCGGATAAAGAGCAAGATGTTAAGGCGCGT
TATGAAAAATATGCAGAAGCAGAGGCTTGGTTACAAGATAGCGCCTTGATTATCCCAACCGTTTCTCAAGGTGGACGCCC
ACAACTTTCCAAAGTTGTACCGTTTTCATCGCCGGTTTCTGATGTCGGAACAAAGGGTGATGTTACAGTATTCAAATACA
AAAAAGTTCAAAAAGACGTTGTTACTGTAAAAGATTATGAAGCGGCACGTGAGAAATGGCTCAAAGAAAAAGCTGAATCT
AACGCTAAATACCAAGAAGATTTATCAAAACACGTAAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.909

100

0.565
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.551

Multiple sequence alignment