Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CDO84_RS00975 Genome accession   NZ_CP021911
Coordinates   202225..202674 (-) Length   149 a.a.
NCBI ID   WP_040084206.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 197225..207674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS00945 (CDO84_00945) - 197380..198060 (-) 681 WP_040084211.1 amino acid ABC transporter permease -
  CDO84_RS00950 (CDO84_00950) - 198070..198933 (-) 864 WP_040084210.1 transporter substrate-binding domain-containing protein -
  CDO84_RS21310 - 199095..199290 (+) 196 Protein_180 hypothetical protein -
  CDO84_RS00955 (CDO84_00955) - 199308..199763 (+) 456 WP_040084209.1 RDD family protein -
  CDO84_RS00960 (CDO84_00960) - 199844..200176 (+) 333 WP_040084394.1 YckD family protein -
  CDO84_RS00965 (CDO84_00965) bglC 200330..201763 (+) 1434 WP_040084208.1 6-phospho-beta-glucosidase -
  CDO84_RS00970 (CDO84_00970) nin/comJ 201800..202198 (-) 399 WP_014662735.1 DNA-entry nuclease inhibitor Regulator
  CDO84_RS00975 (CDO84_00975) nucA/comI 202225..202674 (-) 450 WP_040084206.1 DNA-entry nuclease Machinery gene
  CDO84_RS00980 (CDO84_00980) tlpC 202842..204563 (-) 1722 WP_040084205.1 methyl-accepting chemotaxis protein TlpC -
  CDO84_RS00985 (CDO84_00985) hxlB 204674..205231 (-) 558 WP_040084203.1 6-phospho-3-hexuloisomerase -
  CDO84_RS00990 (CDO84_00990) hxlA 205237..205869 (-) 633 WP_040084201.1 3-hexulose-6-phosphate synthase -
  CDO84_RS00995 (CDO84_00995) hxlR 206102..206464 (+) 363 WP_014662740.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16365.28 Da        Isoelectric Point: 4.4321

>NTDB_id=234767 CDO84_RS00975 WP_040084206.1 202225..202674(-) (nucA/comI) [Bacillus sp. MD-5]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=234767 CDO84_RS00975 WP_040084206.1 202225..202674(-) (nucA/comI) [Bacillus sp. MD-5]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAATCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

96.644

100

0.966

Multiple sequence alignment