Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S101441_RS20285 Genome accession   NZ_CP021507
Coordinates   3807525..3807644 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain SRCM101441     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3802525..3812644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101441_RS20260 (S101441_04090) albG 3802693..3803394 (+) 702 WP_069837830.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  S101441_RS20265 (S101441_04091) ywhL 3803400..3804776 (-) 1377 WP_069837831.1 YncE family protein -
  S101441_RS20270 ywhK 3804815..3806166 (-) 1352 Protein_3946 YncE family protein -
  S101441_RS23395 - 3806163..3806393 (-) 231 Protein_3947 hypothetical protein -
  S101441_RS20280 (S101441_04094) rapF 3806396..3807541 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  S101441_RS20285 (S101441_04095) phrF 3807525..3807644 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  S101441_RS20290 (S101441_04096) - 3807742..3808169 (+) 428 Protein_3950 YbaK/EbsC family protein -
  S101441_RS20295 (S101441_04097) speB 3808234..3809106 (-) 873 WP_003227545.1 agmatinase -
  S101441_RS20300 (S101441_04098) speE 3809167..3809997 (-) 831 WP_003227543.1 spermidine synthase -
  S101441_RS20305 (S101441_04099) pbpG 3810199..3812274 (+) 2076 WP_069837833.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=231509 S101441_RS20285 WP_009968329.1 3807525..3807644(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101441]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=231509 S101441_RS20285 WP_009968329.1 3807525..3807644(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM101441]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment