Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S101359_RS12535 Genome accession   NZ_CP021500
Coordinates   2556190..2556525 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551190..2561525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS12515 (S101359_02470) gcvT 2551753..2552847 (-) 1095 WP_088117565.1 glycine cleavage system aminomethyltransferase GcvT -
  S101359_RS12520 (S101359_02471) - 2553308..2554978 (+) 1671 WP_088117566.1 SNF2-related protein -
  S101359_RS12525 (S101359_02472) - 2554999..2555793 (+) 795 WP_003325443.1 YqhG family protein -
  S101359_RS12530 (S101359_02473) sinI 2555983..2556156 (+) 174 WP_003325442.1 anti-repressor SinI family protein Regulator
  S101359_RS12535 (S101359_02474) sinR 2556190..2556525 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  S101359_RS12540 (S101359_02475) - 2556716..2557498 (-) 783 WP_063638541.1 TasA family protein -
  S101359_RS12545 (S101359_02476) - 2557562..2558134 (-) 573 WP_010789195.1 signal peptidase I -
  S101359_RS12550 (S101359_02477) tapA 2558118..2558819 (-) 702 WP_088117567.1 amyloid fiber anchoring/assembly protein TapA -
  S101359_RS12555 (S101359_02478) - 2559081..2559404 (+) 324 WP_088117568.1 DUF3889 domain-containing protein -
  S101359_RS12560 (S101359_02479) - 2559451..2559630 (-) 180 WP_003325435.1 YqzE family protein -
  S101359_RS12565 (S101359_02480) comGG 2559700..2560074 (-) 375 WP_088117569.1 competence type IV pilus minor pilin ComGG Machinery gene
  S101359_RS12570 (S101359_02481) comGF 2560075..2560581 (-) 507 WP_274379311.1 competence type IV pilus minor pilin ComGF -
  S101359_RS12575 (S101359_02482) comGE 2560484..2560831 (-) 348 WP_088117570.1 competence type IV pilus minor pilin ComGE Machinery gene
  S101359_RS12580 (S101359_02483) comGD 2560815..2561180 (-) 366 WP_258235513.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=231295 S101359_RS12535 WP_003153104.1 2556190..2556525(+) (sinR) [Bacillus atrophaeus strain SRCM101359]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=231295 S101359_RS12535 WP_003153104.1 2556190..2556525(+) (sinR) [Bacillus atrophaeus strain SRCM101359]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment