Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J54_RS14490 Genome accession   NZ_CP020402
Coordinates   158475..158939 (-) Length   154 a.a.
NCBI ID   WP_172595939.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 155856..158062 158475..158939 flank 413


Gene organization within MGE regions


Location: 155856..158939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS00925 (A6J54_00880) - 155856..156509 (-) 654 WP_105184296.1 IS1595 family transposase -
  A6J54_RS00930 (A6J54_00885) - 156629..156835 (-) 207 WP_002220254.1 hypothetical protein -
  A6J54_RS00935 (A6J54_00895) - 157055..158062 (-) 1008 WP_080541855.1 IS5 family transposase -
  A6J54_RS14485 - 158215..158415 (-) 201 WP_079758530.1 hypothetical protein -
  A6J54_RS14490 comE 158475..158939 (-) 465 WP_172595939.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16576.93 Da        Isoelectric Point: 10.9695

>NTDB_id=222235 A6J54_RS14490 WP_172595939.1 158475..158939(-) (comE) [Neisseria meningitidis strain FDAARGOS_215]
MLYPEKMSGMAGRHLYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222235 A6J54_RS14490 WP_172595939.1 158475..158939(-) (comE) [Neisseria meningitidis strain FDAARGOS_215]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCTGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCACTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment