Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   A6J54_RS10875 Genome accession   NZ_CP020402
Coordinates   1847606..1848226 (-) Length   206 a.a.
NCBI ID   WP_002253554.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842606..1853226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS10860 (A6J54_10520) pilX 1845606..1846079 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  A6J54_RS10865 (A6J54_10525) pilK 1846084..1846677 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J54_RS10870 (A6J54_10530) pilJ 1846656..1847609 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  A6J54_RS10875 (A6J54_10535) pilV 1847606..1848226 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  A6J54_RS10880 (A6J54_10540) pilH 1848256..1848924 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J54_RS10890 (A6J54_10545) dnaB 1849226..1850632 (-) 1407 WP_002219448.1 replicative DNA helicase -
  A6J54_RS10900 (A6J54_10555) - 1850795..1851382 (+) 588 WP_002246908.1 superoxide dismutase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22375.31 Da        Isoelectric Point: 4.9853

>NTDB_id=222226 A6J54_RS10875 WP_002253554.1 1847606..1848226(-) (pilV) [Neisseria meningitidis strain FDAARGOS_215]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNNTLSHTLSAVDGEFAIDAIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTFSGNAFSSNCDN
KANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 621 bp        

>NTDB_id=222226 A6J54_RS10875 WP_002253554.1 1847606..1848226(-) (pilV) [Neisseria meningitidis strain FDAARGOS_215]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACAATACACTATCGCATACACTATCAGCTGTGGATGGTGAGTTTGCGATTGATGCCATAAA
AACTAAGACACAGTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCA
TCCATTACGCCGTCTGCAAGGATTCGTCGGGTAACGCGCCGACATTCTCCGGCAATGCTTTTTCTTCAAATTGCGACAAT
AAGGCAAACGGGGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCT
TGAGGTGAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

96.602

100

0.966
  pilI Neisseria gonorrhoeae MS11

83.495

100

0.835
  pilV Neisseria gonorrhoeae MS11

83.495

100

0.835

Multiple sequence alignment