Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   B2G52_RS11005 Genome accession   NZ_CP019894
Coordinates   2058274..2061483 (-) Length   1069 a.a.
NCBI ID   WP_078836026.1    Uniprot ID   A0AAU8VJC6
Organism   Neisseria lactamica strain Y92-1009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053274..2066483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS10985 (B2G52_10980) mtrC 2053728..2054966 (-) 1239 WP_078836024.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  B2G52_RS10990 (B2G52_10985) mtrR 2055214..2055846 (+) 633 WP_019272642.1 multidrug efflux system transcriptional repressor MtrR -
  B2G52_RS10995 (B2G52_10990) - 2056092..2056304 (-) 213 WP_042508319.1 hypothetical protein -
  B2G52_RS11000 (B2G52_10995) mtrF 2056638..2058206 (+) 1569 WP_078836025.1 AbgT family antimetabolite efflux transporter MtrF -
  B2G52_RS11005 (B2G52_11000) recC 2058274..2061483 (-) 3210 WP_078836026.1 exodeoxyribonuclease V subunit gamma Machinery gene
  B2G52_RS11010 (B2G52_11005) - 2061584..2062993 (-) 1410 WP_078836027.1 PepSY-associated TM helix domain-containing protein -
  B2G52_RS11015 (B2G52_11010) ccoP 2063259..2064590 (-) 1332 WP_078836028.1 cytochrome-c oxidase, cbb3-type subunit III -
  B2G52_RS11020 (B2G52_11015) - 2064614..2064784 (-) 171 WP_003706994.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  B2G52_RS11025 (B2G52_11020) ccoO 2064789..2065400 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120735.43 Da        Isoelectric Point: 4.6956

>NTDB_id=218748 B2G52_RS11005 WP_078836026.1 2058274..2061483(-) (recC) [Neisseria lactamica strain Y92-1009]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRCVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETA
GSVNTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECLFDLLESRFEVDKVLALLETAPVLCRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDRLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIETLSDIARIWRQPATVGEWVARCRDLLEILFQTGADDQK
AVQNLENEWVKWQEESTLAGFVGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDNPVESCEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWHEPYIDPAWEPAEPFEPQHAEQIAETYIEARREGQDFSETAARIAAESLLPSGELGRLWQQSFQLAAKQIDTAVLNS
PKLPPFPYAISSDGQILKGSLSNLYQCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSETEMRQTFIVQSGETEILAEIA
QDRALRLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=218748 B2G52_RS11005 WP_078836026.1 2058274..2061483(-) (recC) [Neisseria lactamica strain Y92-1009]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAGAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTATCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGCATT
CCGGAACTCAGCCCGTTTGCGCCTGAAGTGATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGTGCAGAGTTTCAAAACGG
AGCGGAATTTGAAGACGTAAGGTGTGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTCTATCGTCCCCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTATCTTGATGACGGCAGGCAGAGCGCGCCGCACCGTGTTGC
TTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGCGACAAACTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATCTGCAACTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAACGTCATTGAGGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCTTCATTGGGCAAGCAGGGGCGCGACTTTTTCGATTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATCCAAAACCTGAAAATGCCGTCTGAAACGGCG
GGAAGCGTCAACACGGACGACGGCTCGATACGCATCGTATCGGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCACGACATCGCCGTATTAACCCCGAACATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGCCAACCGTTTTTTTATGCATTGGAATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTCGCGCTTTTGGAAACCGCCCCCGTGTTGTGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGATATGG
TTGCCGATTTGAACGTTCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCGGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGACCTGTTCGGACGTTTTGCCGCCTTTATCGAGACCCTGTCGGATATTGCCCGGATATGGCGGCAGC
CCGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAATATTGTTCCAAACCGGGGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGTACTCTGGCTGGGTTCGTCGGACAGTTGCCGCC
GCACACCGTCATCCGCCACATCCGCCGCTTCCTCGACAGCGAAAGCGAAGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCTTTTAAAGTCATCTGCCTGCTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGAGCCCGTCGCGACGACGACCGCTACCT
GTTCCTTGAAGCTCTCATCAGCGCGCGTGAAATCCTGTATTTGTCCTACATCGGGCGCGATATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCGCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGCAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCGGACGGCATATTCGG
CACGCGTACCGATTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCACAACCCTTTTTCGACAACCCCGTCGAAAGTT
GCGAACCTGTTGCTGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGCACGAACCCTATATCGACCCGGCGTGGGAGCCGGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACAAGATTTTTCCGAAACTGCCGCCCGTATCGCGGCGGAAAGCCTGCTGC
CTTCCGGAGAATTGGGCAGGCTTTGGCAGCAGTCTTTCCAACTTGCCGCCAAACAAATCGACACAGCGGTTTTAAACAGC
CCCAAACTGCCCCCGTTCCCATACGCCATATCGTCGGACGGGCAAATCCTGAAAGGCAGTTTGAGCAATTTATACCAATG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAATGCGCCGCAACGTGTGGCTTTTTTGTTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAACCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCGGCTGTTGTCGGAATGGATGGCATTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGCCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.294

100

0.943

Multiple sequence alignment