Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   B1780_RS05150 Genome accession   NZ_CP019838
Coordinates   1020682..1021197 (-) Length   171 a.a.
NCBI ID   WP_002882705.1    Uniprot ID   A0A5T1TAX2
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1015682..1026197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS05135 (B1780_05190) - 1015795..1017612 (-) 1818 WP_016818353.1 motility associated factor glycosyltransferase family protein -
  B1780_RS05140 (B1780_05195) - 1017612..1019432 (-) 1821 WP_016818352.1 motility associated factor glycosyltransferase family protein -
  B1780_RS05145 - 1019442..1020682 (-) 1241 Protein_1005 DUF2920 family protein -
  B1780_RS05150 (B1780_05210) ctsG 1020682..1021197 (-) 516 WP_002882705.1 type II secretion system protein Machinery gene
  B1780_RS05155 (B1780_05215) tsaD 1021198..1022205 (-) 1008 WP_002858276.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  B1780_RS05160 (B1780_05220) - 1022202..1023596 (-) 1395 WP_002882704.1 M99 family carboxypeptidase catalytic domain-containing protein -
  B1780_RS05165 (B1780_05225) dxr 1023598..1024668 (-) 1071 WP_002853864.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  B1780_RS05170 (B1780_05230) cdsA 1024665..1025390 (-) 726 WP_002882703.1 phosphatidate cytidylyltransferase -
  B1780_RS05175 (B1780_05235) - 1025399..1025737 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18765.55 Da        Isoelectric Point: 5.2731

>NTDB_id=218448 B1780_RS05150 WP_002882705.1 1020682..1021197(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=218448 B1780_RS05150 WP_002882705.1 1020682..1021197(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1TAX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment