Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   BVD88_RS02990 Genome accession   NZ_CP018907
Coordinates   495479..498688 (+) Length   1069 a.a.
NCBI ID   WP_076612636.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 490479..503688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS02965 (BVD88_03110) ccoO 491625..492236 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  BVD88_RS02970 (BVD88_03115) - 492241..492411 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  BVD88_RS14330 (BVD88_03120) ccoP 492435..493766 (+) 1332 Protein_479 cytochrome-c oxidase, cbb3-type subunit III -
  BVD88_RS02985 (BVD88_03130) - 493968..495377 (+) 1410 WP_002222104.1 PepSY-associated TM helix domain-containing protein -
  BVD88_RS02990 (BVD88_03135) recC 495479..498688 (+) 3210 WP_076612636.1 exodeoxyribonuclease V subunit gamma Machinery gene
  BVD88_RS02995 (BVD88_03140) mtrF 498758..500326 (-) 1569 WP_002224346.1 AbgT family antimetabolite efflux transporter MtrF -
  BVD88_RS03000 (BVD88_03145) - 500660..500872 (+) 213 WP_002238258.1 hypothetical protein -
  BVD88_RS03005 (BVD88_03150) mtrR 501151..501783 (-) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  BVD88_RS03010 (BVD88_03160) mtrC 502187..503425 (+) 1239 WP_002232912.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120795.36 Da        Isoelectric Point: 4.7972

>NTDB_id=211655 BVD88_RS02990 WP_076612636.1 495479..498688(+) (recC) [Neisseria meningitidis strain M21273]
MFYLYQSNRLETLAALFARIQKVKPLKSVLQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILS
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVGTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQK
AVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQNFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGNKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTFAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=211655 BVD88_RS02990 WP_076612636.1 495479..498688(+) (recC) [Neisseria meningitidis strain M21273]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGTTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGTCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCTGAAGTGATGCGCTGGCGGCTGTTGGATTTGTTCCGCAGCGAGGCATTTCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTAGGCAGCGGCGAATCGGCAGATTATCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTTGTCTATCGTCCGCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCAGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTATCTTGATGACGGCAGGCAGAGCGCGCCGCACCGTGTTGC
GTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTTGCACTCAATCCGAGTGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCGGTACGGATGACGGTTCGATACGTATCGTCTCCGCGCACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAATATCGAATCCT
ATACGCCTTTTATCGAGGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATAAGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCACCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGTACGGATATGGCGGCAAC
CTGCGACGGTTGATGAATGGGTAGGACGTTGCCGAGGTTTGCTTGAAACATTGTTCCAAGCCGAAGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACAGAATTGGCGCAATTTTCCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGAGCCCGTCGCGATGACGACCGCTACCT
GTTCCTTGAAGCTCTCATCAGCGCGCGTGAAATCCTGTATTTGTCCTACATCGGGCGCGATATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCGCTGTTGGGCGAACTCATCGACACAGTTGCCGCCATGACCGGCACAAACAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCACTGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGAACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGTTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.107

100

0.941

Multiple sequence alignment