Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   BU815_RS06745 Genome accession   NZ_CP018900
Coordinates   1308768..1309283 (-) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli strain YH502     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303768..1314283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BU815_RS06725 (BU815_06755) - 1303879..1305696 (-) 1818 WP_075395247.1 motility associated factor glycosyltransferase family protein -
  BU815_RS06730 (BU815_06760) - 1305693..1307516 (-) 1824 WP_075395248.1 motility associated factor glycosyltransferase family protein -
  BU815_RS09740 - 1307528..1308768 (-) 1241 Protein_1309 DUF2920 family protein -
  BU815_RS06745 (BU815_06775) ctsG 1308768..1309283 (-) 516 WP_002838045.1 type II secretion system protein Machinery gene
  BU815_RS06750 (BU815_06780) tsaD 1309287..1310294 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  BU815_RS06755 (BU815_06785) - 1310291..1311685 (-) 1395 WP_002822458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  BU815_RS06760 (BU815_06790) dxr 1311682..1312758 (-) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  BU815_RS06765 (BU815_06795) - 1312755..1313480 (-) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  BU815_RS06770 (BU815_06800) - 1313489..1313827 (-) 339 WP_002806264.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=211486 BU815_RS06745 WP_002838045.1 1308768..1309283(-) (ctsG) [Campylobacter coli strain YH502]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=211486 BU815_RS06745 WP_002838045.1 1308768..1309283(-) (ctsG) [Campylobacter coli strain YH502]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment