Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BS467_RS02395 Genome accession   NZ_CP018574
Coordinates   506243..506671 (+) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain GLB197     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 501243..511671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS02380 (BS467_02385) - 501832..503817 (-) 1986 WP_035390499.1 hydantoinase B/oxoprolinase family protein -
  BS467_RS02385 (BS467_02390) - 503807..505876 (-) 2070 WP_074041704.1 hydantoinase/oxoprolinase family protein -
  BS467_RS02395 (BS467_02400) nucA/comI 506243..506671 (+) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BS467_RS02400 (BS467_02405) - 506798..508495 (+) 1698 WP_074041705.1 methyl-accepting chemotaxis protein -
  BS467_RS02405 (BS467_02410) comJ 508633..509019 (+) 387 WP_074041706.1 competence protein ComJ -
  BS467_RS02410 (BS467_02415) - 509021..509827 (-) 807 WP_074041707.1 aminoglycoside N(3)-acetyltransferase -
  BS467_RS02415 (BS467_02420) - 509852..510271 (-) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  BS467_RS02420 (BS467_02425) - 510387..511151 (+) 765 WP_074041708.1 MBL fold metallo-hydrolase -
  BS467_RS02425 (BS467_02430) - 511198..511527 (-) 330 WP_017366586.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=208963 BS467_RS02395 WP_007498233.1 506243..506671(+) (nucA/comI) [Bacillus altitudinis strain GLB197]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=208963 BS467_RS02395 WP_007498233.1 506243..506671(+) (nucA/comI) [Bacillus altitudinis strain GLB197]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCAATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment