Detailed information    

insolico Bioinformatically predicted

Overview


Name   comK   Type   Regulator
Locus tag   BSL056_RS05155 Genome accession   NZ_CP018197
Coordinates   1052225..1052803 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain KCTC 12796BP     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1047225..1057803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS05135 (BSL056_05165) - 1047720..1049015 (-) 1296 WP_073204589.1 globin-coupled sensor protein -
  BSL056_RS05140 (BSL056_05170) - 1049108..1050640 (-) 1533 WP_073204592.1 FAD-dependent oxidoreductase -
  BSL056_RS05145 (BSL056_05175) - 1050782..1051642 (+) 861 WP_073204595.1 SDR family oxidoreductase -
  BSL056_RS05150 (BSL056_05180) - 1051699..1051935 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  BSL056_RS05155 (BSL056_05185) comK 1052225..1052803 (+) 579 WP_024425481.1 competence protein ComK Regulator
  BSL056_RS05160 (BSL056_05190) - 1053103..1053585 (+) 483 WP_073204598.1 hypothetical protein -
  BSL056_RS05165 (BSL056_05195) - 1053616..1055055 (-) 1440 WP_073204600.1 PLP-dependent aminotransferase family protein -
  BSL056_RS05170 (BSL056_05200) - 1055201..1056370 (+) 1170 WP_024425484.1 MFS transporter -
  BSL056_RS05175 (BSL056_05205) - 1056436..1056714 (+) 279 WP_024425485.1 barstar family protein -

Sequence


Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=207013 BSL056_RS05155 WP_024425481.1 1052225..1052803(+) (comK) [Bacillus safensis strain KCTC 12796BP]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=207013 BSL056_RS05155 WP_024425481.1 1052225..1052803(+) (comK) [Bacillus safensis strain KCTC 12796BP]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCTCATAAACCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGT
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains


Predicted by InterproScan.

(10-158)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62


Multiple sequence alignment