Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD34_RS07595 Genome accession   NZ_CP017863
Coordinates   1438390..1438701 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain IF1100     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433390..1443701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD34_RS07575 (BLD34_07575) ctsE 1434259..1435818 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  BLD34_RS07580 (BLD34_07580) ctsX 1435808..1436395 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BLD34_RS07585 (BLD34_07585) ctsP 1436399..1437007 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD34_RS07590 (BLD34_07590) ctsD 1437000..1438412 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD34_RS07595 (BLD34_07595) ctsR 1438390..1438701 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  BLD34_RS07600 (BLD34_07600) nifJ 1438725..1442285 (-) 3561 WP_002886267.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD34_RS07605 (BLD34_07605) - 1442383..1443021 (-) 639 WP_002886266.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=203354 BLD34_RS07595 WP_002855438.1 1438390..1438701(-) (ctsR) [Campylobacter jejuni strain IF1100]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203354 BLD34_RS07595 WP_002855438.1 1438390..1438701(-) (ctsR) [Campylobacter jejuni strain IF1100]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment