Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GTID1_RS15830 | Genome accession | NZ_CP017690 |
| Coordinates | 3172402..3173472 (+) | Length | 356 a.a. |
| NCBI ID | WP_029760727.1 | Uniprot ID | - |
| Organism | Geobacillus thermodenitrificans strain ID-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3167402..3178472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTID1_RS15800 (GTID1_15460) | - | 3167521..3168684 (+) | 1164 | WP_008879858.1 | M14 family metallopeptidase | - |
| GTID1_RS15805 (GTID1_15465) | - | 3168720..3168896 (-) | 177 | WP_008879857.1 | DUF2759 domain-containing protein | - |
| GTID1_RS15810 (GTID1_15470) | - | 3169076..3169708 (+) | 633 | WP_008879856.1 | MBL fold metallo-hydrolase | - |
| GTID1_RS15815 (GTID1_15475) | - | 3169940..3171067 (+) | 1128 | WP_087960149.1 | class I SAM-dependent methyltransferase | - |
| GTID1_RS15820 (GTID1_15480) | - | 3171098..3171340 (-) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GTID1_RS15825 (GTID1_15485) | - | 3171504..3172202 (-) | 699 | WP_008879853.1 | helix-turn-helix transcriptional regulator | - |
| GTID1_RS15830 (GTID1_15490) | comGA | 3172402..3173472 (+) | 1071 | WP_029760727.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GTID1_RS15835 (GTID1_15495) | comGB | 3173469..3174497 (+) | 1029 | WP_099233351.1 | competence type IV pilus assembly protein ComGB | - |
| GTID1_RS15840 (GTID1_15500) | comGC | 3174565..3174861 (+) | 297 | WP_011887800.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GTID1_RS15845 (GTID1_15505) | comGD | 3174851..3175288 (+) | 438 | WP_008879849.1 | competence type IV pilus minor pilin ComGD | - |
| GTID1_RS15850 (GTID1_15510) | - | 3175272..3175598 (+) | 327 | WP_011887799.1 | hypothetical protein | - |
| GTID1_RS15855 (GTID1_15515) | comGF | 3175535..3176020 (+) | 486 | WP_011887798.1 | competence type IV pilus minor pilin ComGF | - |
| GTID1_RS15860 (GTID1_15520) | comGG | 3176154..3176543 (+) | 390 | WP_008879846.1 | competence type IV pilus minor pilin ComGG | - |
| GTID1_RS15865 (GTID1_15525) | - | 3176589..3176768 (+) | 180 | WP_008879845.1 | YqzE family protein | - |
| GTID1_RS15870 (GTID1_15530) | - | 3176845..3177639 (-) | 795 | WP_011887796.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 39595.73 Da Isoelectric Point: 8.6314
>NTDB_id=201858 GTID1_RS15830 WP_029760727.1 3172402..3173472(+) (comGA) [Geobacillus thermodenitrificans strain ID-1]
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
MDDIEQVANRLLAEAVQRRASDLHLVPRRHDAIIRLRLDGMLIDVGTISKETAERVIVHFKFLAGMDIGERRRPQSGAME
VNESGETVYLRLSTLPTLYDESLVIRLLPQRFSLPLRELSLFSHSTARLFSFMQQPQGLVLLTGPTGSGKTTTLYTLLDV
CQAERQRNIITLEDPIEKRNDRFLQVQINEKAGITYAASLKAALRHDPDVLMVGEIRDHDTAAIAVRSALTGHLVVSTMH
AADAVGAVYRLHEFGVSPGDLAETLLAVSAQRLVELRCPLCGDNCHPACRRLQRRRRAAVHELLYGSALFDVIRSLSGEG
EQRLRPHLTLARLIRKGIALGYLPTRALELVGGGER
Nucleotide
Download Length: 1071 bp
>NTDB_id=201858 GTID1_RS15830 WP_029760727.1 3172402..3173472(+) (comGA) [Geobacillus thermodenitrificans strain ID-1]
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAGCGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGTCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
CTGGATGATATCGAACAAGTAGCGAACCGTCTCCTCGCCGAAGCGGTGCAACGCCGCGCCTCTGACCTTCATCTCGTCCC
GCGCCGACATGATGCGATCATTCGCCTCCGCCTTGACGGCATGCTCATCGATGTTGGTACAATCTCGAAAGAAACCGCTG
AACGCGTCATCGTCCATTTCAAATTTTTGGCTGGCATGGATATTGGCGAACGCCGTCGTCCGCAAAGCGGCGCGATGGAA
GTGAATGAGTCCGGGGAAACGGTGTATTTGCGCTTATCCACGCTGCCGACGCTTTATGATGAAAGCCTCGTCATCCGCCT
TCTACCGCAGCGCTTTTCGCTGCCGCTTCGTGAACTATCCTTATTTTCCCACTCCACCGCACGATTGTTTTCCTTTATGC
AGCAGCCACAAGGACTCGTGTTGCTGACCGGCCCAACCGGGTCGGGAAAGACGACGACATTGTATACGCTTCTCGACGTT
TGCCAAGCGGAAAGACAACGTAACATTATCACGTTGGAAGATCCGATTGAAAAGCGGAATGATCGGTTTTTGCAAGTGCA
GATCAATGAAAAAGCAGGTATCACGTATGCAGCCAGCTTGAAAGCCGCTTTGCGCCATGACCCGGATGTGTTAATGGTCG
GCGAGATCCGCGACCATGATACGGCAGCGATCGCCGTACGATCAGCGTTGACAGGGCACTTGGTGGTATCGACCATGCAT
GCTGCTGATGCAGTCGGCGCAGTGTATCGGCTCCATGAGTTCGGGGTGTCTCCCGGCGACTTGGCTGAGACGTTGCTTGC
TGTTTCGGCGCAGCGTCTTGTTGAGCTTCGCTGCCCGCTATGCGGTGACAATTGCCATCCGGCTTGTCGTCGGCTTCAAC
GAAGACGGCGTGCTGCCGTTCATGAGTTGCTTTACGGCTCAGCGCTCTTTGATGTCATCCGTTCGCTGTCGGGGGAAGGC
GAGCAACGGCTCCGCCCGCATCTGACATTAGCACGTCTTATCCGCAAAGGAATCGCGCTCGGGTATTTGCCGACTCGCGC
GCTTGAACTTGTCGGAGGGGGAGAACGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
51.585 |
97.472 |
0.503 |
| pilB | Glaesserella parasuis strain SC1401 |
37.83 |
95.787 |
0.362 |