Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | KAB02_RS08470 | Genome accession | NZ_CP017644 |
| Coordinates | 1767731..1768111 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain KAB02 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1762731..1773111
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAB02_RS08440 (KAB02_01697) | kdsB | 1763634..1764395 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| KAB02_RS08445 (KAB02_01698) | - | 1764407..1765387 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| KAB02_RS08450 (KAB02_01699) | - | 1765399..1765740 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| KAB02_RS08455 (KAB02_01700) | - | 1765758..1766531 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| KAB02_RS08460 (KAB02_01701) | - | 1766569..1767177 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| KAB02_RS08465 (KAB02_01702) | - | 1767187..1767741 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| KAB02_RS08470 (KAB02_01703) | xcpV | 1767731..1768111 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| KAB02_RS08475 (KAB02_01704) | xcpW | 1768111..1768812 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| KAB02_RS08480 (KAB02_01705) | gspK | 1768812..1769771 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| KAB02_RS08485 (KAB02_01706) | - | 1770002..1770598 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| KAB02_RS08490 (KAB02_01707) | ung | 1770649..1771362 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| KAB02_RS08495 (KAB02_01708) | - | 1771359..1772483 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| KAB02_RS08500 (KAB02_01709) | tadA | 1772490..1772993 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=200958 KAB02_RS08470 WP_000836911.1 1767731..1768111(+) (xcpV) [Acinetobacter baumannii strain KAB02]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=200958 KAB02_RS08470 WP_000836911.1 1767731..1768111(+) (xcpV) [Acinetobacter baumannii strain KAB02]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |