Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   A4W83_RS05600 Genome accession   NZ_CP017566
Coordinates   1091218..1093485 (-) Length   755 a.a.
NCBI ID   WP_099947352.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.114     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086218..1098485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W83_RS05575 (A4W83_05505) - 1086340..1087287 (-) 948 WP_056946677.1 hypothetical protein -
  A4W83_RS05580 (A4W83_05510) - 1087376..1089094 (-) 1719 WP_056946680.1 ribonuclease J -
  A4W83_RS05585 (A4W83_05515) rpsO 1089322..1089591 (-) 270 WP_011374766.1 30S ribosomal protein S15 -
  A4W83_RS05590 (A4W83_05520) rpsT 1089870..1090124 (+) 255 WP_011374767.1 30S ribosomal protein S20 -
  A4W83_RS05595 (A4W83_05525) holA 1090193..1091221 (-) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  A4W83_RS05600 (A4W83_05530) comEC 1091218..1093485 (-) 2268 WP_099947352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A4W83_RS05605 (A4W83_05535) - 1093482..1093970 (-) 489 WP_011374770.1 ComE operon protein 2 -
  A4W83_RS05610 (A4W83_05540) comEA 1094028..1094735 (-) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  A4W83_RS05615 (A4W83_05545) - 1094807..1095853 (-) 1047 WP_056946687.1 SepM family pheromone-processing serine protease -
  A4W83_RS05620 (A4W83_05550) coaD 1095855..1096352 (-) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  A4W83_RS05625 (A4W83_05555) rsmD 1096365..1096919 (-) 555 WP_251944585.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4W83_RS05630 (A4W83_05560) - 1096924..1097214 (-) 291 WP_011374775.1 YlbG family protein -
  A4W83_RS05635 (A4W83_05565) - 1097238..1098326 (-) 1089 WP_251944587.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 85387.17 Da        Isoelectric Point: 10.0762

>NTDB_id=200381 A4W83_RS05600 WP_099947352.1 1091218..1093485(-) (comEC) [Latilactobacillus sakei strain TMW 1.114]
MKNNWIYPVICLISLNSLMLGGQSWLTWSLLLLAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFK
VQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRC
FYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLH
VFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQ
PYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLP
VSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAI
HFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDA
DHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQA
QIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQA
AKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=200381 A4W83_RS05600 WP_099947352.1 1091218..1093485(-) (comEC) [Latilactobacillus sakei strain TMW 1.114]
ATGAAAAACAACTGGATTTATCCAGTTATTTGTTTAATCAGTTTAAATAGCTTAATGCTTGGGGGGCAATCTTGGTTAAC
CTGGAGCTTATTATTATTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTAT
GCCTTGTTTACGGGGGCCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAA
GTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAA
GGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAA
AAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGC
TTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTG
GCGCCAAACGTGTGCACTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGC
GGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCAC
GTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATT
TGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGT
TACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAG
CCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCAC
TTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGA
TAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCT
GTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGCTCAAATTCC
CCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATG
GCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATT
CATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCG
GCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAG
CGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCC
GATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAA
TCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAG
TGGGATCGCAAAAATTTAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCA
CAAATTGGTGGGGCTAGCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACA
ATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACT
TAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCG
GCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCA
AACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-452)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.603

100

0.996

Multiple sequence alignment