Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A7J08_RS03300 Genome accession   NZ_CP017088
Coordinates   644353..645156 (+) Length   267 a.a.
NCBI ID   WP_029172537.1    Uniprot ID   A0A3S6JK27
Organism   Streptococcus suis strain SRD478     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 639353..650156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS03275 (A7J08_03140) - 639781..640479 (-) 699 WP_004298848.1 amino acid ABC transporter permease -
  A7J08_RS03280 (A7J08_03145) - 640494..641333 (-) 840 WP_044758261.1 transporter substrate-binding domain-containing protein -
  A7J08_RS03285 (A7J08_03150) - 641344..642105 (-) 762 WP_053867000.1 amino acid ABC transporter ATP-binding protein -
  A7J08_RS03290 (A7J08_03155) micA 642300..643004 (+) 705 WP_002935840.1 response regulator YycF Regulator
  A7J08_RS03295 (A7J08_03160) micB 642997..644346 (+) 1350 WP_053867001.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A7J08_RS03300 (A7J08_03165) vicX 644353..645156 (+) 804 WP_029172537.1 MBL fold metallo-hydrolase Regulator
  A7J08_RS10560 - 645414..646250 (+) 837 WP_235443465.1 ATP-binding cassette domain-containing protein -
  A7J08_RS10565 (A7J08_03175) - 646290..646799 (+) 510 WP_235443466.1 ATP-binding cassette domain-containing protein -
  A7J08_RS03310 (A7J08_03180) pbp2b 646891..648966 (+) 2076 WP_053867002.1 penicillin-binding protein PBP2B -
  A7J08_RS03315 (A7J08_03185) recR 648975..649571 (+) 597 WP_024386938.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29687.77 Da        Isoelectric Point: 5.7755

>NTDB_id=195397 A7J08_RS03300 WP_029172537.1 644353..645156(+) (vicX) [Streptococcus suis strain SRD478]
MIGKGFNYSILASGSSGNCFYLETDRKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=195397 A7J08_RS03300 WP_029172537.1 644353..645156(+) (vicX) [Streptococcus suis strain SRD478]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAGAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAATCTCAA
ACAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S6JK27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment