Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | A6L17_RS02730 | Genome accession | NZ_CP016650 |
| Coordinates | 524877..525815 (-) | Length | 312 a.a. |
| NCBI ID | WP_002248274.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain M07149 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 483147..539139 | 524877..525815 | within | 0 |
Gene organization within MGE regions
Location: 483147..539139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6L17_RS02460 (A6L17_02460) | - | 483147..483515 (+) | 369 | WP_002220735.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| A6L17_RS14040 | - | 483531..483701 (+) | 171 | WP_164728559.1 | hypothetical protein | - |
| A6L17_RS02465 (A6L17_02465) | - | 483953..484444 (+) | 492 | WP_002217437.1 | DUF4760 domain-containing protein | - |
| A6L17_RS02470 (A6L17_02470) | - | 484803..485039 (+) | 237 | WP_002217439.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| A6L17_RS02475 (A6L17_02475) | - | 485041..485388 (+) | 348 | WP_002217440.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L17_RS02480 (A6L17_02480) | - | 485441..485950 (-) | 510 | WP_002220734.1 | hypothetical protein | - |
| A6L17_RS02485 (A6L17_02485) | - | 485962..486435 (-) | 474 | WP_002220733.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| A6L17_RS02490 (A6L17_02490) | - | 486574..486849 (-) | 276 | WP_002217443.1 | hypothetical protein | - |
| A6L17_RS02495 (A6L17_02495) | - | 486846..487271 (-) | 426 | WP_002220721.1 | hypothetical protein | - |
| A6L17_RS02500 (A6L17_02500) | - | 487335..487706 (-) | 372 | WP_002220720.1 | hypothetical protein | - |
| A6L17_RS14630 | - | 487774..487980 (-) | 207 | WP_002217448.1 | hypothetical protein | - |
| A6L17_RS02505 (A6L17_02505) | - | 487997..488443 (-) | 447 | WP_002220718.1 | hypothetical protein | - |
| A6L17_RS02510 (A6L17_02510) | gpJ | 488514..492779 (-) | 4266 | WP_002220717.1 | TipJ family phage tail tip protein | - |
| A6L17_RS02515 (A6L17_02515) | - | 492915..493637 (-) | 723 | WP_002220716.1 | tail assembly protein | - |
| A6L17_RS02520 (A6L17_02520) | - | 493634..494389 (-) | 756 | WP_002244525.1 | C40 family peptidase | - |
| A6L17_RS02525 (A6L17_02525) | - | 494386..495108 (-) | 723 | WP_002217456.1 | phage minor tail protein L | - |
| A6L17_RS02530 (A6L17_02530) | - | 495168..495437 (-) | 270 | WP_002217457.1 | phage tail protein | - |
| A6L17_RS02535 (A6L17_02535) | - | 495459..498677 (-) | 3219 | WP_002224445.1 | phage tail length tape measure family protein | - |
| A6L17_RS02540 (A6L17_02540) | - | 498670..498942 (-) | 273 | WP_002220710.1 | DUF1799 domain-containing protein | - |
| A6L17_RS02545 (A6L17_02545) | - | 498990..499301 (-) | 312 | WP_002220709.1 | phage tail assembly chaperone | - |
| A6L17_RS02550 (A6L17_02550) | - | 499365..500006 (-) | 642 | WP_002220708.1 | phage tail protein | - |
| A6L17_RS02555 (A6L17_02555) | - | 500038..500457 (-) | 420 | WP_002244524.1 | hypothetical protein | - |
| A6L17_RS02560 (A6L17_02560) | - | 500438..500740 (-) | 303 | WP_002244523.1 | head-tail joining protein | - |
| A6L17_RS02565 (A6L17_02565) | - | 500733..500960 (-) | 228 | WP_002220705.1 | hypothetical protein | - |
| A6L17_RS02570 (A6L17_02570) | - | 501018..502910 (-) | 1893 | WP_002220704.1 | phage major capsid protein | - |
| A6L17_RS02575 (A6L17_02575) | - | 502891..504453 (-) | 1563 | WP_002220703.1 | phage portal protein | - |
| A6L17_RS02580 (A6L17_02580) | - | 504462..504716 (-) | 255 | WP_002220702.1 | hypothetical protein | - |
| A6L17_RS02585 (A6L17_02585) | - | 504703..505089 (-) | 387 | WP_002220701.1 | DUF3310 domain-containing protein | - |
| A6L17_RS02590 (A6L17_02590) | - | 505092..505301 (-) | 210 | WP_002220700.1 | hypothetical protein | - |
| A6L17_RS02595 (A6L17_02595) | - | 505318..508164 (-) | 2847 | WP_002220699.1 | primase-helicase family protein | - |
| A6L17_RS02600 (A6L17_02600) | - | 508279..508626 (-) | 348 | WP_002220698.1 | hypothetical protein | - |
| A6L17_RS02605 (A6L17_02605) | - | 509026..509742 (+) | 717 | WP_002220696.1 | LexA family transcriptional regulator | - |
| A6L17_RS02610 (A6L17_02610) | - | 509845..510270 (+) | 426 | WP_002220695.1 | hypothetical protein | - |
| A6L17_RS02615 (A6L17_02615) | - | 510501..510701 (+) | 201 | WP_002219431.1 | hypothetical protein | - |
| A6L17_RS02620 (A6L17_02620) | - | 510769..511128 (+) | 360 | WP_002220694.1 | hypothetical protein | - |
| A6L17_RS02625 (A6L17_02625) | - | 511153..512007 (+) | 855 | WP_002220693.1 | YfdQ family protein | - |
| A6L17_RS02630 (A6L17_02630) | - | 512079..512294 (+) | 216 | WP_002220692.1 | hypothetical protein | - |
| A6L17_RS02635 (A6L17_02635) | - | 512330..512590 (+) | 261 | WP_002220690.1 | NGO1622 family putative holin | - |
| A6L17_RS02640 (A6L17_02640) | - | 512587..512880 (+) | 294 | WP_002220689.1 | hypothetical protein | - |
| A6L17_RS02645 (A6L17_02645) | - | 512883..513074 (+) | 192 | WP_002219435.1 | type ISP restriction/modification enzyme | - |
| A6L17_RS02650 (A6L17_02650) | - | 513074..513214 (+) | 141 | WP_002220688.1 | hypothetical protein | - |
| A6L17_RS02655 (A6L17_02655) | - | 513211..513420 (+) | 210 | WP_002220687.1 | hypothetical protein | - |
| A6L17_RS02660 (A6L17_02660) | - | 513478..514395 (-) | 918 | WP_002220686.1 | KilA-N domain-containing protein | - |
| A6L17_RS02665 (A6L17_02665) | - | 515263..515742 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| A6L17_RS02680 (A6L17_02680) | - | 516178..516558 (-) | 381 | WP_002220683.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L17_RS02685 (A6L17_02685) | - | 516713..517909 (-) | 1197 | WP_002224447.1 | tyrosine-type recombinase/integrase | - |
| A6L17_RS02700 (A6L17_02700) | yaaA | 518441..519220 (-) | 780 | WP_002220681.1 | peroxide stress protein YaaA | - |
| A6L17_RS14720 | - | 519269..519394 (-) | 126 | Protein_517 | IS5/IS1182 family transposase | - |
| A6L17_RS02705 (A6L17_02705) | dapC | 519482..520669 (-) | 1188 | WP_002220680.1 | succinyldiaminopimelate transaminase | - |
| A6L17_RS02710 (A6L17_02710) | dut | 520745..521197 (-) | 453 | WP_002220679.1 | dUTP diphosphatase | - |
| A6L17_RS02715 (A6L17_02715) | - | 521340..521768 (+) | 429 | Protein_520 | AzlC family ABC transporter permease | - |
| A6L17_RS02720 (A6L17_02720) | pilX | 523827..524300 (-) | 474 | WP_002248276.1 | PilX family type IV pilin | Machinery gene |
| A6L17_RS02725 (A6L17_02725) | pilK | 524305..524898 (-) | 594 | WP_002248275.1 | pilus assembly PilX family protein | Machinery gene |
| A6L17_RS02730 (A6L17_02730) | pilJ | 524877..525815 (-) | 939 | WP_002248274.1 | PilW family protein | Machinery gene |
| A6L17_RS02735 (A6L17_02735) | pilV | 525812..526423 (-) | 612 | WP_002248273.1 | type IV pilus modification protein PilV | Machinery gene |
| A6L17_RS02740 (A6L17_02740) | pilH | 526447..527124 (-) | 678 | WP_002248272.1 | GspH/FimT family pseudopilin | Machinery gene |
| A6L17_RS02745 (A6L17_02745) | dnaB | 527279..528685 (-) | 1407 | WP_002248271.1 | replicative DNA helicase | - |
| A6L17_RS02750 (A6L17_02750) | - | 528848..529435 (+) | 588 | WP_002220670.1 | superoxide dismutase | - |
| A6L17_RS02755 (A6L17_02755) | - | 530007..530516 (-) | 510 | WP_002213852.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| A6L17_RS02760 (A6L17_02760) | - | 530848..531180 (-) | 333 | WP_002226445.1 | hypothetical protein | - |
| A6L17_RS14725 | - | 531225..531332 (-) | 108 | Protein_530 | IS5/IS1182 family transposase | - |
| A6L17_RS02765 (A6L17_02765) | cysT | 531471..532307 (+) | 837 | WP_002226446.1 | sulfate ABC transporter permease subunit CysT | - |
| A6L17_RS02770 (A6L17_02770) | cysW | 532562..533422 (+) | 861 | WP_002220668.1 | sulfate ABC transporter permease subunit CysW | - |
| A6L17_RS02775 (A6L17_02775) | - | 533419..534492 (+) | 1074 | WP_002220667.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| A6L17_RS02780 (A6L17_02780) | ilvA | 534549..536075 (-) | 1527 | WP_002220666.1 | threonine ammonia-lyase, biosynthetic | - |
| A6L17_RS02785 (A6L17_02785) | - | 536223..537392 (+) | 1170 | WP_002244947.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| A6L17_RS02790 (A6L17_02790) | - | 537517..538089 (-) | 573 | WP_002220664.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| A6L17_RS02795 (A6L17_02795) | - | 538156..539139 (-) | 984 | WP_002213870.1 | ribose-phosphate pyrophosphokinase | - |
Sequence
Protein
Download Length: 312 a.a. Molecular weight: 34374.05 Da Isoelectric Point: 8.9869
>NTDB_id=190207 A6L17_RS02730 WP_002248274.1 524877..525815(-) (pilJ) [Neisseria meningitidis strain M07149]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
Nucleotide
Download Length: 939 bp
>NTDB_id=190207 A6L17_RS02730 WP_002248274.1 524877..525815(-) (pilJ) [Neisseria meningitidis strain M07149]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
80.063 |
100 |
0.811 |