Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BBD32_RS10755 Genome accession   NZ_CP016374
Coordinates   2321933..2322586 (-) Length   217 a.a.
NCBI ID   WP_078396122.1    Uniprot ID   A0AAU8UVE0
Organism   Elizabethkingia anophelis strain F3201     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2316933..2327586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD32_RS10725 (BBD32_10660) - 2317014..2317673 (-) 660 WP_021348851.1 DUF4290 domain-containing protein -
  BBD32_RS10730 (BBD32_10665) - 2317749..2318168 (-) 420 WP_009087931.1 thiol-disulfide oxidoreductase DCC family protein -
  BBD32_RS10735 (BBD32_10670) - 2318176..2318655 (-) 480 WP_034845719.1 heme-binding domain-containing protein -
  BBD32_RS10740 (BBD32_10675) der 2318883..2320193 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  BBD32_RS10745 (BBD32_10680) - 2320313..2321167 (-) 855 WP_034845721.1 phospholipase -
  BBD32_RS10750 (BBD32_10685) upp 2321277..2321927 (+) 651 WP_078396121.1 uracil phosphoribosyltransferase -
  BBD32_RS10755 (BBD32_10690) comF 2321933..2322586 (-) 654 WP_078396122.1 ComF family protein Machinery gene
  BBD32_RS10760 (BBD32_10695) - 2322608..2324113 (-) 1506 WP_058877504.1 helix-turn-helix domain-containing protein -
  BBD32_RS10765 (BBD32_10700) aceB 2324192..2325757 (+) 1566 WP_078396123.1 malate synthase A -
  BBD32_RS10770 (BBD32_10705) aceA 2325796..2327070 (+) 1275 WP_078396124.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25287.28 Da        Isoelectric Point: 8.4771

>NTDB_id=187554 BBD32_RS10755 WP_078396122.1 2321933..2322586(-) (comF) [Elizabethkingia anophelis strain F3201]
MNFFTDILFPNRCLQCNHIIDGKDIICEECYDQVDFTHWESLPETLLQQKLSSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGNTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=187554 BBD32_RS10755 WP_078396122.1 2321933..2322586(-) (comF) [Elizabethkingia anophelis strain F3201]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGAATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACCGGAGACACTATTGCAACAGAAATTATCTTCTC
TTTTCCCTGTTGAGAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAATACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.837

99.078

0.484

Multiple sequence alignment