Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A8L59_RS19115 Genome accession   NZ_CP015852
Coordinates   4306253..4306888 (-) Length   211 a.a.
NCBI ID   WP_064588697.1    Uniprot ID   A0AAC9FYX6
Organism   Pseudomonas koreensis strain CRS05-R5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4301253..4311888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8L59_RS19080 (A8L59_19060) - 4301489..4301959 (-) 471 WP_064588691.1 (2Fe-2S)-binding protein -
  A8L59_RS19085 (A8L59_19065) murB 4302370..4303389 (-) 1020 WP_064588692.1 UDP-N-acetylmuramate dehydrogenase -
  A8L59_RS19090 (A8L59_19070) - 4303386..4303850 (-) 465 WP_064588693.1 low molecular weight protein-tyrosine-phosphatase -
  A8L59_RS19095 (A8L59_19075) kdsB 4303850..4304614 (-) 765 WP_064588694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A8L59_RS19100 (A8L59_19080) - 4304611..4304796 (-) 186 WP_003174668.1 Trm112 family protein -
  A8L59_RS19105 (A8L59_19085) lpxK 4304818..4305828 (-) 1011 WP_064588695.1 tetraacyldisaccharide 4'-kinase -
  A8L59_RS19110 (A8L59_19090) - 4305828..4306256 (-) 429 WP_064588696.1 ExbD/TolR family protein -
  A8L59_RS19115 (A8L59_19095) exbB 4306253..4306888 (-) 636 WP_064588697.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A8L59_RS19120 (A8L59_19100) comA 4306990..4309224 (-) 2235 WP_064588698.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A8L59_RS19125 (A8L59_19105) - 4309360..4309878 (+) 519 WP_064588699.1 DUF2062 domain-containing protein -
  A8L59_RS19130 (A8L59_19110) - 4310044..4310823 (-) 780 WP_064588700.1 ABC transporter permease -
  A8L59_RS19135 (A8L59_19115) - 4310820..4311752 (-) 933 WP_064588701.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 6.8770

>NTDB_id=182501 A8L59_RS19115 WP_064588697.1 4306253..4306888(-) (exbB) [Pseudomonas koreensis strain CRS05-R5]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAGRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=182501 A8L59_RS19115 WP_064588697.1 4306253..4306888(-) (exbB) [Pseudomonas koreensis strain CRS05-R5]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTGTGGATCAAGGACA
AGCAGCTCAACAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGTTGGGTGAAATCCTAGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGGCCGGGTGATCCATGAGCTGGAGCGCTACGT
CAACGCGCTGGGCACCATTGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCCTCGGTGCTGGCCGGCGGTATTTCCAAGGCGTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment