Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A7P66_RS00225 Genome accession   NZ_CP015645
Coordinates   38571..38966 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-02119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 33571..43966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7P66_RS00195 (A7P66_00195) - 34830..35234 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  A7P66_RS00200 (A7P66_00200) - 35571..35663 (+) 93 WP_031835036.1 hypothetical protein -
  A7P66_RS00205 (A7P66_00205) - 35795..36028 (+) 234 WP_000384523.1 DUF1146 family protein -
  A7P66_RS00210 (A7P66_00210) murA 36139..37404 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A7P66_RS00215 (A7P66_00215) fabZ 37438..37878 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  A7P66_RS00220 (A7P66_00220) - 37937..38377 (-) 441 WP_064646617.1 YwpF-like family protein -
  A7P66_RS00225 (A7P66_00225) ssb 38571..38966 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  A7P66_RS00230 (A7P66_00230) sceD 39355..40050 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  A7P66_RS00235 (A7P66_00235) tenA 40630..41319 (+) 690 WP_000396079.1 thiaminase II -
  A7P66_RS00240 (A7P66_00240) thiD 41312..42142 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  A7P66_RS00245 (A7P66_00245) thiM 42126..42917 (+) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  A7P66_RS00250 (A7P66_00250) thiE 42919..43560 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=181697 A7P66_RS00225 WP_000932694.1 38571..38966(+) (ssb) [Staphylococcus aureus strain 08-02119]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=181697 A7P66_RS00225 WP_000932694.1 38571..38966(+) (ssb) [Staphylococcus aureus strain 08-02119]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment