Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AZF37_RS11195 Genome accession   NZ_CP014606
Coordinates   171020..171667 (-) Length   215 a.a.
NCBI ID   WP_245611991.1    Uniprot ID   -
Organism   Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 166020..176667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZF37_RS01105 (AZF37_01100) - 166470..167663 (+) 1194 WP_088369210.1 polysaccharide ABC transporter ATP-binding protein -
  AZF37_RS01110 (AZF37_01105) rfbB 167668..168675 (+) 1008 WP_162473786.1 dTDP-glucose 4,6-dehydratase -
  AZF37_RS01115 (AZF37_01110) - 168804..169418 (+) 615 Protein_234 ATP-binding cassette domain-containing protein -
  AZF37_RS01120 - 169710..169817 (-) 108 Protein_235 TetR/AcrR family transcriptional regulator -
  AZF37_RS01130 (AZF37_01115) - 170494..170754 (-) 261 Protein_236 DUF2461 family protein -
  AZF37_RS11195 rcrQ 171020..171667 (-) 648 WP_245611991.1 ATP-binding cassette domain-containing protein Regulator
  AZF37_RS11200 - 171820..172140 (-) 321 WP_342668666.1 ABC transporter transmembrane domain-containing protein -
  AZF37_RS11205 - 172046..172768 (-) 723 WP_342668696.1 ABC transporter ATP-binding protein -
  AZF37_RS01140 (AZF37_01125) - 172912..174402 (-) 1491 WP_342668667.1 ABC transporter ATP-binding protein -
  AZF37_RS12615 - 174371..174640 (-) 270 WP_342668668.1 hypothetical protein -
  AZF37_RS01145 - 174773..174919 (-) 147 WP_088369215.1 MarR family transcriptional regulator -
  AZF37_RS10190 - 174931..175104 (-) 174 WP_162473787.1 hypothetical protein -
  AZF37_RS01150 (AZF37_01130) - 175448..175666 (+) 219 WP_088369216.1 hypothetical protein -
  AZF37_RS01155 (AZF37_01135) - 175703..176005 (+) 303 WP_088369217.1 VTT domain-containing protein -
  AZF37_RS10195 - 176005..176148 (+) 144 WP_162473788.1 hypothetical protein -
  AZF37_RS01160 (AZF37_01140) - 176238..176468 (+) 231 WP_088369218.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23923.56 Da        Isoelectric Point: 5.6844

>NTDB_id=172610 AZF37_RS11195 WP_245611991.1 171020..171667(-) (rcrQ) [Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1]
MPVDTLKGNIHFDHIKFGYEPDNILMNDLSIDVRERQTVAIVGPTGAGKTTLVNLLMRFYELNGGAITIDGENIKDLTRS
GLRSLFGMVLQDIWLFNGTIRDNIAYGRKEATVDDVIDAAKAAYADHFIKTLAKGYETIINEEATNISQGQKQLITIARA
ILANQKILILDEATSSVDTRTELLIQQVQQAMGELMKDRTSFVIAHRLSTIKMLI

Nucleotide


Download         Length: 648 bp        

>NTDB_id=172610 AZF37_RS11195 WP_245611991.1 171020..171667(-) (rcrQ) [Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1]
TTGCCAGTAGATACATTAAAAGGCAATATTCATTTTGATCATATTAAATTTGGTTATGAGCCTGATAACATCTTAATGAA
TGATTTATCCATTGATGTGAGGGAAAGACAAACAGTAGCAATTGTAGGTCCTACTGGAGCAGGTAAAACAACATTAGTTA
ATCTCCTAATGCGTTTCTACGAATTAAATGGTGGTGCCATTACTATTGATGGTGAAAACATTAAGGATTTAACTAGAAGT
GGTCTTCGCAGTCTTTTTGGAATGGTACTACAAGACATTTGGCTATTTAATGGAACAATCAGAGATAATATTGCTTATGG
TCGTAAAGAAGCGACTGTTGATGATGTTATTGATGCCGCTAAAGCAGCATATGCTGACCATTTTATTAAAACATTGGCAA
AAGGCTATGAGACAATAATTAACGAAGAAGCGACGAATATATCGCAAGGTCAAAAACAGTTAATTACAATTGCCCGTGCC
ATCCTAGCTAATCAAAAAATATTAATTTTAGATGAAGCTACTAGTAGTGTTGATACTAGAACTGAGCTACTTATCCAACA
AGTCCAACAAGCTATGGGAGAATTAATGAAAGACAGAACAAGCTTTGTAATTGCTCACCGTCTTTCAACTATAAAAATGC
TGATTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.095

97.674

0.567

Multiple sequence alignment