Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AZE33_RS03180 Genome accession   NZ_CP014528
Coordinates   691316..691726 (+) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH858     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 686316..696726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE33_RS03165 (AZE33_03165) - 687305..689611 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  AZE33_RS03170 (AZE33_03170) - 689656..690429 (-) 774 WP_020752798.1 SDR family oxidoreductase -
  AZE33_RS03175 (AZE33_03175) mazG 690541..691347 (+) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  AZE33_RS03180 (AZE33_03180) comEA 691316..691726 (+) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  AZE33_RS03185 (AZE33_03185) pcnB 691851..693314 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AZE33_RS03190 (AZE33_03190) folK 693311..693793 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AZE33_RS03195 (AZE33_03195) panB 693839..694648 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AZE33_RS03200 (AZE33_03200) panC 694652..695500 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AZE33_RS03205 (AZE33_03205) rapZ 695523..696374 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AZE33_RS03210 (AZE33_03210) - 696371..696640 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=172091 AZE33_RS03180 WP_002036702.1 691316..691726(+) (comEA) [Acinetobacter baumannii strain XH858]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=172091 AZE33_RS03180 WP_002036702.1 691316..691726(+) (comEA) [Acinetobacter baumannii strain XH858]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375

Multiple sequence alignment