Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AWM80_RS12300 Genome accession   NZ_CP014166
Coordinates   2393362..2393697 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain CU1050     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2388362..2398697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM80_RS12280 (AWM80_12285) gcvT 2388954..2390042 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  AWM80_RS12285 (AWM80_12290) hepAA 2390484..2392157 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  AWM80_RS12290 (AWM80_12295) yqhG 2392178..2392972 (+) 795 WP_003230200.1 YqhG family protein -
  AWM80_RS12295 (AWM80_12300) sinI 2393155..2393328 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  AWM80_RS12300 (AWM80_12305) sinR 2393362..2393697 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  AWM80_RS12305 (AWM80_12310) tasA 2393790..2394575 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  AWM80_RS12310 (AWM80_12315) sipW 2394639..2395211 (-) 573 WP_003246088.1 signal peptidase I SipW -
  AWM80_RS12315 (AWM80_12320) tapA 2395195..2395956 (-) 762 Protein_2355 amyloid fiber anchoring/assembly protein TapA -
  AWM80_RS12320 (AWM80_12325) yqzG 2396228..2396554 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  AWM80_RS12325 (AWM80_12330) spoIITA 2396596..2396775 (-) 180 WP_003230176.1 YqzE family protein -
  AWM80_RS12330 (AWM80_12335) comGG 2396846..2397220 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  AWM80_RS12335 (AWM80_12340) comGF 2397221..2397604 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  AWM80_RS12340 (AWM80_12345) comGE 2397630..2397977 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  AWM80_RS12345 (AWM80_12350) comGD 2397961..2398392 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  AWM80_RS12350 (AWM80_12355) comGC 2398382..2398678 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=169129 AWM80_RS12300 WP_003226345.1 2393362..2393697(+) (sinR) [Bacillus subtilis subsp. subtilis strain CU1050]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=169129 AWM80_RS12300 WP_003226345.1 2393362..2393697(+) (sinR) [Bacillus subtilis subsp. subtilis strain CU1050]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment