Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HSISS4_RS09040 Genome accession   NZ_CP013216
Coordinates   1961191..1962147 (-) Length   318 a.a.
NCBI ID   WP_002885753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956191..1967147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS09010 (HSISS4_01754) proC 1956729..1957499 (+) 771 WP_021144680.1 pyrroline-5-carboxylate reductase -
  HSISS4_RS09015 (HSISS4_01755) - 1957526..1958188 (-) 663 WP_021144681.1 CPBP family intramembrane glutamic endopeptidase -
  HSISS4_RS09020 (HSISS4_01756) - 1958301..1958747 (-) 447 WP_021144682.1 hypothetical protein -
  HSISS4_RS09025 (HSISS4_01757) - 1958825..1959481 (-) 657 WP_002887011.1 CPBP family intramembrane glutamic endopeptidase -
  HSISS4_RS09030 (HSISS4_01758) - 1959493..1959690 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  HSISS4_RS09035 (HSISS4_01759) - 1959941..1961134 (-) 1194 WP_002885831.1 acetate kinase -
  HSISS4_RS09040 (HSISS4_01760) comYH 1961191..1962147 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  HSISS4_RS09045 (HSISS4_01761) comGG 1962192..1962509 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  HSISS4_RS09050 (HSISS4_01762) comYF 1962487..1962924 (-) 438 WP_021144684.1 competence type IV pilus minor pilin ComGF Machinery gene
  HSISS4_RS09055 (HSISS4_01763) comGE 1962911..1963141 (-) 231 WP_021144685.1 competence type IV pilus minor pilin ComGE -
  HSISS4_RS09060 (HSISS4_01764) comYD 1963173..1963601 (-) 429 WP_253183813.1 competence type IV pilus minor pilin ComGD Machinery gene
  HSISS4_RS09065 (HSISS4_01765) comYC 1963561..1963887 (-) 327 WP_002885815.1 competence type IV pilus major pilin ComGC Machinery gene
  HSISS4_RS09070 (HSISS4_01766) comYB 1963884..1964984 (-) 1101 WP_144429890.1 competence type IV pilus assembly protein ComGB Machinery gene
  HSISS4_RS09075 (HSISS4_01767) comYA 1964866..1965807 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  HSISS4_RS09080 (HSISS4_01768) - 1965889..1966251 (-) 363 WP_021144688.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35775.66 Da        Isoelectric Point: 4.3482

>NTDB_id=160724 HSISS4_RS09040 WP_002885753.1 1961191..1962147(-) (comYH) [Streptococcus salivarius strain HSISS4]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=160724 HSISS4_RS09040 WP_002885753.1 1961191..1962147(-) (comYH) [Streptococcus salivarius strain HSISS4]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATTAAACTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCGGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGCATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGATCTACCTGTTGG
TTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698

Multiple sequence alignment