Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   DE8555_RS03405 Genome accession   NZ_CP012393
Coordinates   660727..661725 (-) Length   332 a.a.
NCBI ID   WP_002221268.1    Uniprot ID   A0AAD2J6P7
Organism   Neisseria meningitidis strain DE8555     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 655727..666725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8555_RS03385 (DE8555_0627) - 657105..657731 (-) 627 WP_002221271.1 phosphoribosylanthranilate isomerase -
  DE8555_RS03390 (DE8555_0628) greB 657790..658281 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  DE8555_RS03395 (DE8555_0629) purF 658381..659925 (-) 1545 WP_002221269.1 amidophosphoribosyltransferase -
  DE8555_RS13600 (DE8555_0630) - 660070..660240 (-) 171 WP_153308407.1 hypothetical protein -
  DE8555_RS03400 (DE8555_0631) - 660237..660734 (-) 498 WP_002214153.1 CvpA family protein -
  DE8555_RS03405 (DE8555_0632) tpc 660727..661725 (-) 999 WP_002221268.1 cell division protein FtsN Machinery gene
  DE8555_RS03410 (DE8555_0633) folC 661738..663012 (-) 1275 WP_063399872.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  DE8555_RS03415 (DE8555_0634) - 663044..663484 (-) 441 WP_063399870.1 protein YgfX -
  DE8555_RS03420 (DE8555_0635) - 663489..663848 (-) 360 WP_002241294.1 hypothetical protein -
  DE8555_RS03425 (DE8555_0636) - 663921..664649 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  DE8555_RS03430 (DE8555_0638) rsmA 664822..665601 (-) 780 WP_063399868.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DE8555_RS03435 (DE8555_0639) - 665798..666508 (+) 711 WP_002221263.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35577.94 Da        Isoelectric Point: 10.1759

>NTDB_id=154157 DE8555_RS03405 WP_002221268.1 660727..661725(-) (tpc) [Neisseria meningitidis strain DE8555]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETNGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKETKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=154157 DE8555_RS03405 WP_002221268.1 660727..661725(-) (tpc) [Neisseria meningitidis strain DE8555]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAACGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAACGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TGCCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAAGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934


Multiple sequence alignment