Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF1296T_RS07040 | Genome accession | NZ_CP011968 |
| Coordinates | 1437668..1438714 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1409785..1477270 | 1437668..1438714 | within | 0 |
Gene organization within MGE regions
Location: 1409785..1477270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF1296T_RS06915 (CDIF1296T_01374) | rimP | 1414027..1414488 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF1296T_RS06920 (CDIF1296T_01375) | nusA | 1414518..1415672 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF1296T_RS06925 (CDIF1296T_01376) | rnpM | 1415679..1415960 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF1296T_RS06930 (CDIF1296T_01377) | - | 1415950..1416261 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF1296T_RS06935 (CDIF1296T_01378) | infB | 1416283..1418223 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF1296T_RS06940 (CDIF1296T_01379) | rbfA | 1418266..1418646 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF1296T_RS06945 (CDIF1296T_01380) | - | 1418627..1419304 (+) | 678 | Protein_1249 | DHH family phosphoesterase | - |
| CDIF1296T_RS06955 (CDIF1296T_01381) | tnpB | 1419953..1421071 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF1296T_RS06960 (CDIF1296T_01382) | - | 1421189..1421494 (+) | 306 | Protein_1251 | DHH family phosphoesterase | - |
| CDIF1296T_RS06965 (CDIF1296T_01383) | truB | 1421507..1422412 (+) | 906 | WP_009896221.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF1296T_RS06970 (CDIF1296T_01384) | - | 1422543..1423472 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF1296T_RS06980 (CDIF1296T_01385) | rpsO | 1423576..1423833 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF1296T_RS06985 (CDIF1296T_01386) | - | 1424073..1424918 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF1296T_RS06990 (CDIF1296T_01387) | pnp | 1425043..1427154 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF1296T_RS06995 (CDIF1296T_01388) | - | 1427420..1428163 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF1296T_RS07000 (CDIF1296T_01389) | - | 1428321..1429568 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CDIF1296T_RS07005 (CDIF1296T_01390) | - | 1429603..1429848 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF1296T_RS07010 (CDIF1296T_01391) | dapG | 1429858..1431081 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF1296T_RS07015 (CDIF1296T_01392) | - | 1431194..1431928 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF1296T_RS07020 (CDIF1296T_01393) | - | 1432051..1434462 (+) | 2412 | WP_009896226.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF1296T_RS07025 (CDIF1296T_01394) | mnmH | 1434465..1435523 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF1296T_RS07030 (CDIF1296T_01395) | rimO | 1435517..1436851 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF1296T_RS07035 (CDIF1296T_01396) | pgsA | 1436838..1437380 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF1296T_RS07040 (CDIF1296T_01397) | recA | 1437668..1438714 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF1296T_RS07045 (CDIF1296T_01398) | rny | 1438890..1440431 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF1296T_RS07050 (CDIF1296T_01399) | - | 1441066..1442847 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF1296T_RS07055 (CDIF1296T_01400) | lepB | 1442929..1443459 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| CDIF1296T_RS07060 (CDIF1296T_01401) | - | 1443499..1444323 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF1296T_RS07065 (CDIF1296T_01402) | - | 1444580..1445488 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF1296T_RS07070 (CDIF1296T_01403) | purB | 1445632..1447077 (+) | 1446 | WP_009896234.1 | adenylosuccinate lyase | - |
| CDIF1296T_RS07075 (CDIF1296T_01404) | - | 1447389..1447841 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF1296T_RS07080 (CDIF1296T_01405) | - | 1448176..1449372 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF1296T_RS07085 (CDIF1296T_01406) | galT | 1449757..1450707 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF1296T_RS07090 (CDIF1296T_01407) | - | 1450868..1451620 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF1296T_RS07095 (CDIF1296T_01408) | - | 1451712..1452488 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF1296T_RS07100 (CDIF1296T_01409) | - | 1452803..1454701 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF1296T_RS07105 (CDIF1296T_01410) | - | 1454829..1455950 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF1296T_RS07110 (CDIF1296T_01411) | - | 1456149..1456481 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF1296T_RS07115 (CDIF1296T_01412) | - | 1456468..1457550 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CDIF1296T_RS07120 (CDIF1296T_01413) | - | 1457543..1458613 (+) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF1296T_RS07125 (CDIF1296T_01414) | - | 1458715..1459251 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF1296T_RS07130 (CDIF1296T_01415) | - | 1459367..1460074 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF1296T_RS07135 (CDIF1296T_01416) | - | 1460076..1460792 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF1296T_RS07140 (CDIF1296T_01417) | - | 1460794..1461552 (+) | 759 | WP_009896249.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF1296T_RS07145 (CDIF1296T_01418) | - | 1461687..1463075 (+) | 1389 | WP_009896251.1 | two-component system sensor histidine kinase | - |
| CDIF1296T_RS07150 (CDIF1296T_01419) | - | 1463151..1463972 (-) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| CDIF1296T_RS07155 (CDIF1296T_01420) | - | 1464223..1465377 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF1296T_RS07160 (CDIF1296T_01421) | - | 1465560..1465760 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF1296T_RS07165 (CDIF1296T_01422) | - | 1466181..1466609 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF1296T_RS07170 (CDIF1296T_01423) | - | 1466752..1467507 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF1296T_RS07180 (CDIF1296T_01425) | - | 1468208..1468714 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF1296T_RS07185 (CDIF1296T_01426) | - | 1468796..1469116 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF1296T_RS07190 (CDIF1296T_01427) | - | 1469285..1469482 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF1296T_RS07195 (CDIF1296T_01428) | - | 1469587..1470027 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF1296T_RS07200 (CDIF1296T_01429) | - | 1470276..1470719 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CDIF1296T_RS07205 (CDIF1296T_01430) | - | 1470724..1471788 (+) | 1065 | WP_009896260.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF1296T_RS07210 (CDIF1296T_01431) | - | 1471802..1472230 (+) | 429 | WP_009896262.1 | phage tail tube protein | - |
| CDIF1296T_RS07215 (CDIF1296T_01432) | - | 1472344..1472790 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDIF1296T_RS07220 | - | 1472817..1472984 (+) | 168 | WP_009896264.1 | hypothetical protein | - |
| CDIF1296T_RS07225 (CDIF1296T_01433) | - | 1472984..1475314 (+) | 2331 | WP_009896266.1 | hypothetical protein | - |
| CDIF1296T_RS07230 (CDIF1296T_01434) | - | 1475314..1475736 (+) | 423 | WP_009896267.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=149752 CDIF1296T_RS07040 WP_003428218.1 1437668..1438714(+) (recA) [Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=149752 CDIF1296T_RS07040 WP_003428218.1 1437668..1438714(+) (recA) [Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.