Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABU16_RS17440 Genome accession   NZ_CP011882
Coordinates   3383990..3384757 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain TO-A JPC     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3378990..3389757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS17420 (ABU16_3462) ppsR 3379165..3379977 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ABU16_RS17425 (ABU16_3463) ccpN 3380003..3380641 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ABU16_RS17430 (ABU16_3464) glyS 3380774..3382813 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  ABU16_RS17435 (ABU16_3465) glyQ 3382806..3383693 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ABU16_RS17440 (ABU16_3466) recO 3383990..3384757 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  ABU16_RS22050 (ABU16_3467) yqzL 3384794..3384937 (-) 144 WP_003230053.1 YqzL family protein -
  ABU16_RS17450 (ABU16_3468) era 3385085..3385990 (-) 906 WP_003230051.1 GTPase Era -
  ABU16_RS17455 (ABU16_3469) cdd 3385971..3386381 (-) 411 WP_003230049.1 cytidine deaminase -
  ABU16_RS17460 (ABU16_3470) unpK 3386500..3386871 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  ABU16_RS17465 (ABU16_3471) ybeY 3386852..3387325 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ABU16_RS17470 (ABU16_3472) pgpH 3387326..3389461 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=149204 ABU16_RS17440 WP_003230055.1 3383990..3384757(-) (recO) [Bacillus subtilis strain TO-A JPC]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=149204 ABU16_RS17440 WP_003230055.1 3383990..3384757(-) (recO) [Bacillus subtilis strain TO-A JPC]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment