Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMQ301_RS01125 Genome accession   NZ_CP011217
Coordinates   193502..194440 (+) Length   312 a.a.
NCBI ID   WP_046206388.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 188502..199440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS09840 (SMQ301_0172) - 190097..191176 (+) 1080 Protein_159 peptide ABC transporter substrate-binding protein -
  SMQ301_RS01090 (SMQ301_0173) - 191178..191396 (+) 219 Protein_160 ABC transporter permease subunit -
  SMQ301_RS11380 - 191407..192444 (+) 1038 Protein_161 ABC transporter permease -
  SMQ301_RS10530 - 192458..193500 (+) 1043 Protein_162 ABC transporter ATP-binding protein -
  SMQ301_RS01125 (SMQ301_0182) amiF 193502..194440 (+) 939 WP_046206388.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS12180 (SMQ301_0183) - 194554..194715 (+) 162 WP_232086214.1 hypothetical protein -
  SMQ301_RS01135 (SMQ301_0184) hslO 194990..195856 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  SMQ301_RS01140 (SMQ301_0185) dusB 195849..196826 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  SMQ301_RS01145 (SMQ301_0186) - 197055..198323 (+) 1269 WP_011225384.1 peptidase -
  SMQ301_RS01150 (SMQ301_0187) - 198429..198872 (+) 444 WP_014607905.1 zinc-dependent MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35166.92 Da        Isoelectric Point: 6.6983

>NTDB_id=143604 SMQ301_RS01125 WP_046206388.1 193502..194440(+) (amiF) [Streptococcus thermophilus strain SMQ-301]
MTQERKKLVELKNVSLTFNKGKSNEVKAIDDVSFAIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTAQMIFQDPQASLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNPHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRHMYEIRSGHFVYATEAEAKKYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=143604 SMQ301_RS01125 WP_046206388.1 193502..194440(+) (amiF) [Streptococcus thermophilus strain SMQ-301]
ATGACACAAGAACGTAAAAAGTTAGTAGAATTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTAA
GGCTATTGATGACGTTAGCTTTGCTATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTCTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGCTCAGATGATCTTTCAAGATCCTCAAGCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCCCATGAGTTTTCTGGTGGTCAACGTCAA
AGGATTGGTATTGCGCGTGCTTTAGCGGTTAATCCTCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATCCAAGCACAGGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTAGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGCCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGAGAAAATAGACACATGTATGAAATCCGATCAGGACATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAAATATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.77

97.756

0.526
  amiF Streptococcus thermophilus LMG 18311

53.443

97.756

0.522
  amiF Streptococcus salivarius strain HSISS4

53.115

97.756

0.519

Multiple sequence alignment