Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   bslm_RS18425 Genome accession   NZ_CP011101
Coordinates   3700591..3700710 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus sp. LM 4-2     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3695591..3705710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS18400 (BsLM_3770) albG 3695754..3696455 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  bslm_RS18405 (BsLM_3771) - 3696461..3697837 (-) 1377 WP_046381401.1 YncE family protein -
  bslm_RS18410 (BsLM_3772) - 3697877..3699232 (-) 1356 WP_046381402.1 YncE family protein -
  bslm_RS21820 (BsLM_3773) - 3699229..3699459 (-) 231 WP_024572000.1 hypothetical protein -
  bslm_RS18420 (BsLM_3774) rapF 3699462..3700607 (+) 1146 WP_046381403.1 response regulator aspartate phosphatase RapF Regulator
  bslm_RS18425 phrF 3700591..3700710 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  bslm_RS18430 - 3700808..3701270 (+) 463 Protein_3716 YbaK/EbsC family protein -
  bslm_RS18435 (BsLM_3776) speB 3701302..3702174 (-) 873 WP_003227545.1 agmatinase -
  bslm_RS18440 (BsLM_3777) speE 3702235..3703065 (-) 831 WP_003227543.1 spermidine synthase -
  bslm_RS18445 (BsLM_3778) - 3703268..3705343 (+) 2076 WP_029726084.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=142227 bslm_RS18425 WP_041334633.1 3700591..3700710(+) (phrF) [Bacillus sp. LM 4-2]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=142227 bslm_RS18425 WP_041334633.1 3700591..3700710(+) (phrF) [Bacillus sp. LM 4-2]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment