Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CUGBS08_RS01320 | Genome accession | NZ_CP010874 |
| Coordinates | 217393..217788 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain CU_GBS_08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 212393..222788
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUGBS08_RS01285 (CUGBS08_00267) | proC | 212787..213557 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| CUGBS08_RS01290 (CUGBS08_00268) | pepA | 213627..214694 (-) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
| CUGBS08_RS01295 (CUGBS08_00269) | - | 214879..215118 (-) | 240 | WP_000660180.1 | hypothetical protein | - |
| CUGBS08_RS01300 (CUGBS08_00270) | - | 215279..215563 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| CUGBS08_RS01305 (CUGBS08_00271) | - | 215560..215883 (+) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| CUGBS08_RS01310 (CUGBS08_00272) | ytpR | 215916..216542 (+) | 627 | WP_000578328.1 | YtpR family tRNA-binding protein | - |
| CUGBS08_RS01315 (CUGBS08_00273) | - | 216596..217312 (-) | 717 | WP_000186185.1 | class I SAM-dependent methyltransferase | - |
| CUGBS08_RS01320 (CUGBS08_00274) | ssbA | 217393..217788 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| CUGBS08_RS01325 (CUGBS08_00275) | - | 217912..218556 (+) | 645 | WP_000416612.1 | HAD family hydrolase | - |
| CUGBS08_RS01330 (CUGBS08_00276) | - | 218583..220328 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| CUGBS08_RS01335 (CUGBS08_00277) | - | 220309..221049 (+) | 741 | WP_000697630.1 | LytR/AlgR family response regulator transcription factor | - |
| CUGBS08_RS01340 (CUGBS08_00278) | - | 221219..221674 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| CUGBS08_RS01345 (CUGBS08_00279) | lrgB | 221676..222404 (+) | 729 | WP_000421726.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=140441 CUGBS08_RS01320 WP_000282447.1 217393..217788(+) (ssbA) [Streptococcus agalactiae strain CU_GBS_08]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=140441 CUGBS08_RS01320 WP_000282447.1 217393..217788(+) (ssbA) [Streptococcus agalactiae strain CU_GBS_08]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |