Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VAA049_RS01375 | Genome accession | NZ_CP010811 |
| Coordinates | 288213..288797 (+) | Length | 194 a.a. |
| NCBI ID | WP_046121321.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 1154-74 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 283213..293797
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VAA049_RS01360 (VAA049_262) | oxyR | 283618..284511 (+) | 894 | WP_046121319.1 | DNA-binding transcriptional regulator OxyR | - |
| VAA049_RS01365 (VAA049_263) | - | 284587..287064 (-) | 2478 | WP_046121320.1 | penicillin-binding protein 1A | - |
| VAA049_RS01370 (VAA049_264) | pilM | 287207..288223 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| VAA049_RS01375 (VAA049_265) | pilN | 288213..288797 (+) | 585 | WP_046121321.1 | PilN domain-containing protein | Machinery gene |
| VAA049_RS01380 (VAA049_266) | pilO | 288790..289380 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VAA049_RS01385 (VAA049_267) | pilP | 289370..289888 (+) | 519 | WP_046121322.1 | pilus assembly protein PilP | Machinery gene |
| VAA049_RS01390 (VAA049_268) | pilQ | 289914..291629 (+) | 1716 | WP_046121323.1 | type IV pilus secretin PilQ | Machinery gene |
| VAA049_RS01395 (VAA049_269) | aroK | 291816..292340 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| VAA049_RS01400 (VAA049_270) | aroB | 292368..293453 (+) | 1086 | WP_046121324.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22007.48 Da Isoelectric Point: 9.7294
>NTDB_id=139930 VAA049_RS01375 WP_046121321.1 288213..288797(+) (pilN) [Vibrio cholerae strain 1154-74]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQLIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQLIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=139930 VAA049_RS01375 WP_046121321.1 288213..288797(+) (pilN) [Vibrio cholerae strain 1154-74]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTCGATCAGCTGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCATTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTCGATCAGCTGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCATTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
98.969 |
100 |
0.99 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |