Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | SE88_RS02370 | Genome accession | NZ_CP010436 |
| Coordinates | 475709..475972 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | T0EUE0 |
| Organism | Helicobacter pylori strain 26695-1MET | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 470709..480972
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE88_RS02345 (SE88_02345) | - | 473278..473946 (+) | 669 | WP_001862498.1 | AAA family ATPase | - |
| SE88_RS02350 (SE88_02350) | - | 473924..474711 (+) | 788 | Protein_435 | integrase | - |
| SE88_RS02355 (SE88_02355) | - | 474714..474944 (+) | 231 | WP_000189081.1 | hypothetical protein | - |
| SE88_RS02360 (SE88_02360) | - | 474937..475416 (+) | 480 | WP_000593414.1 | hypothetical protein | - |
| SE88_RS02365 (SE88_02365) | comB2 | 475413..475697 (+) | 285 | WP_000736478.1 | TrbC/VirB2 family protein | Machinery gene |
| SE88_RS02370 (SE88_02370) | comB3 | 475709..475972 (+) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| SE88_RS02375 (SE88_02375) | - | 475984..476220 (+) | 237 | WP_001168532.1 | hypothetical protein | - |
| SE88_RS02380 (SE88_02380) | - | 476220..478796 (+) | 2577 | WP_000893960.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| SE88_RS08880 (SE88_02385) | - | 478793..478933 (+) | 141 | WP_000789926.1 | hypothetical protein | - |
| SE88_RS02390 (SE88_02390) | - | 478926..479411 (+) | 486 | Protein_443 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=137113 SE88_RS02370 WP_001177716.1 475709..475972(+) (comB3) [Helicobacter pylori strain 26695-1MET]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=137113 SE88_RS02370 WP_001177716.1 475709..475972(+) (comB3) [Helicobacter pylori strain 26695-1MET]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |