Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   SB24_RS14330 Genome accession   NZ_CP010406
Coordinates   3004606..3004746 (+) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus sp. Pc3     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 2999606..3009746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS14305 (SB24_14305) - 2999912..3000310 (+) 399 WP_003152031.1 DUF1694 domain-containing protein -
  SB24_RS14310 (SB24_14310) - 3000407..3000958 (+) 552 WP_025853916.1 isochorismatase family cysteine hydrolase -
  SB24_RS14315 (SB24_14315) - 3000976..3002442 (+) 1467 WP_099686880.1 nicotinate phosphoribosyltransferase -
  SB24_RS14320 (SB24_14320) - 3002572..3003792 (+) 1221 WP_039254052.1 EAL and HDOD domain-containing protein -
  SB24_RS14325 (SB24_14325) - 3003799..3004140 (-) 342 WP_014305721.1 hypothetical protein -
  SB24_RS14330 (SB24_14330) degQ 3004606..3004746 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SB24_RS14335 (SB24_14335) - 3004898..3005809 (+) 912 WP_031378407.1 polyprenyl synthetase family protein -
  SB24_RS14340 (SB24_14340) comX 3005809..3005973 (+) 165 WP_007613432.1 competence pheromone ComX -
  SB24_RS14345 (SB24_14345) comP 3005985..3008276 (+) 2292 WP_039254056.1 histidine kinase Regulator
  SB24_RS14350 (SB24_14350) comA 3008357..3009001 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  SB24_RS14355 (SB24_14355) - 3009023..3009406 (+) 384 WP_007613430.1 hotdog fold thioesterase -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=136901 SB24_RS14330 WP_003152043.1 3004606..3004746(+) (degQ) [Bacillus sp. Pc3]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=136901 SB24_RS14330 WP_003152043.1 3004606..3004746(+) (degQ) [Bacillus sp. Pc3]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891


Multiple sequence alignment